View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18306_low_21 (Length: 251)

Name: NF18306_low_21
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18306_low_21
NF18306_low_21
[»] chr3 (5 HSPs)
chr3 (1-242)||(2575962-2576203)
chr3 (72-133)||(1606421-1606482)
chr3 (72-133)||(1623543-1623604)
chr3 (72-133)||(1629719-1629780)
chr3 (72-133)||(10820918-10820979)
[»] chr8 (1 HSPs)
chr8 (3-212)||(16608183-16608392)
[»] chr7 (1 HSPs)
chr7 (72-133)||(18781237-18781298)
[»] chr4 (2 HSPs)
chr4 (81-154)||(12802812-12802885)
chr4 (72-157)||(8767033-8767118)
[»] scaffold0458 (1 HSPs)
scaffold0458 (1-33)||(12546-12578)
[»] chr1 (4 HSPs)
chr1 (1-33)||(24061011-24061043)
chr1 (1-33)||(39451084-39451116)
chr1 (1-33)||(39460471-39460503)
chr1 (1-33)||(39471956-39471988)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2576203 - 2575962
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtgacagcatttttctgatttggcaatggttttctagcatagatgttacaattttggaaaactacagctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2576203 tttgatttggatcagttctaccttgagctgtgacagcatttttctgatttggcaatggttttctagcatagatgttacaattttggaaaactacagctgc 2576104  T
Q  101 gttgccgaaaatgaagtcgacggtgccatagattttgcaatctctgtagaattgtcttaaagagtggacatagagcgtgtcttgatatccctcgaaactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2576103 gttgccgaaaatgaagtcgacggtgccatagattttgcaatctctgtagaattgtcttaaagagtggacatagagcgtgtcttgatatccctcgaaactg 2576004  T
Q  201 catcggtagaatgttgataggtcggcgttgtttctctctgct 242  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  2576003 catctgtagaatgttgagaggtcggcgttgtttctcactgct 2575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 1606421 - 1606482
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat 133  Q
    |||||||||||||||||||| || || || ||||| || |||||||| ||||||||||||||    
T  1606421 atgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagat 1606482  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 1623543 - 1623604
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat 133  Q
    |||||||| |||||||| ||||| || |||||||| || |||||||| ||||||||||||||    
T  1623543 atgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgccatagat 1623604  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 1629719 - 1629780
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat 133  Q
    ||||||||||||||||| || || || |||||||| || |||||||| ||||||||||||||    
T  1629719 atgttacaattttggaataccactgcggcgttgccaaagatgaagtctacggtgccatagat 1629780  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 10820979 - 10820918
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat 133  Q
    ||||| ||||||||||| || || || |||||||| || |||||||| ||||||||||||||    
T  10820979 atgttgcaattttggaataccactgcagcgttgccaaagatgaagtctacggtgccatagat 10820918  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 16608183 - 16608392
Alignment:
Q  3 tgatttggatcagttctaccttgagctgtgacagcatttttctgatttggcaatggttttctagcatagatgttacaattttggaaaactacagctgcgt 102  Q
    ||||||||||||||||||||||| ||||| | ||||||||| ||||||| || ||||||||| ||| | ||||| |||  ||| |  ||| | || ||||    
T  16608183 tgatttggatcagttctaccttgtgctgttatagcatttttttgatttgccattggttttcttgcaaaaatgttgcaagattgaagtactgcggccgcgt 16608282  T
Q  103 tgccgaaaatgaagtcgacggtgccatagattttgcaatctctgtagaattgtcttaaagagtggacatagagcgtgtcttgatatccctcgaaactgca 202  Q
    ||||||||||||| || || ||||||||||| |  || ||||||||||||||||| |  |||||||||||||| |||||||| ||||| |||||||||||    
T  16608283 tgccgaaaatgaaatcaactgtgccatagatgtcacattctctgtagaattgtctgagggagtggacatagagtgtgtcttggtatccttcgaaactgca 16608382  T
Q  203 tcggtagaat 212  Q
     |||||||||    
T  16608383 acggtagaat 16608392  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 18781237 - 18781298
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat 133  Q
    ||||||||||||||||| ||||| || |||||||| || || ||||||||||||||||||||    
T  18781237 atgttacaattttggaacactactgcggcgttgccaaagataaagtcgacggtgccatagat 18781298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 12802812 - 12802885
Alignment:
Q  81 ttttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagattttgcaatctctgtagaattg 154  Q
    |||||||||||||| ||||||||||| || |||||||| |||||||||||||| |  || |||||||| |||||    
T  12802812 ttttggaaaactacggctgcgttgccaaagatgaagtcaacggtgccatagatgtaacattctctgtaaaattg 12802885  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 8767118 - 8767033
Alignment:
Q  72 atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagattttgcaatctctgtagaattgtct 157  Q
    |||||||||||||| |||||||| || ||||| || || ||||| || || ||||||||||| || || |||||||| ||||||||    
T  8767118 atgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatgttacattctctgtaaaattgtct 8767033  T

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Target: scaffold0458 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12546 - 12578
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  12546 tttgatttggatcagttcgaccttgagctgtga 12578  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24061011 - 24061043
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  24061011 tttgatttggatcagttcgaccttgagctgtga 24061043  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39451116 - 39451084
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39451116 tttgatttggatcagttcgaccttgagctgtga 39451084  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39460503 - 39460471
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39460503 tttgatttggatcagttcgaccttgagctgtga 39460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39471988 - 39471956
Alignment:
Q  1 tttgatttggatcagttctaccttgagctgtga 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39471988 tttgatttggatcagttcgaccttgagctgtga 39471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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