View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_24 (Length: 235)
Name: NF18306_low_24
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38954851 - 38954624
Alignment:
| Q |
1 |
attctaagcaacttattatacttagaatctaaggccaccacgtgaaaatttacacct-------gccaaaacttgtcatgaaaaattgaaaacaatcaac |
93 |
Q |
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| T |
38954851 |
attctaagcaacttattatacttagaatctaaggccaccacgtgaaaatttacacctttaccgagccaaaacttctcatgaaaaattgaaaacaatcaac |
38954752 |
T |
|
| Q |
94 |
atggcattgtcctagagcctaacaggcaagccaaaattgtggaatgtcctgatagttccatcactgccagctgctactattgttagaccccatgtttctg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954751 |
atggcattgtcctagagcctaacaggcaagccaaaattgtggaatgtcttgatagttccatcactgccagctgctactattgttagaccccatgtttctg |
38954652 |
T |
|
| Q |
194 |
atatattccttccatggctactatcttc |
221 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38954651 |
atatattccttccatggctactatcttc |
38954624 |
T |
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