View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_27 (Length: 228)
Name: NF18306_low_27
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 18019099 - 18018948
Alignment:
| Q |
1 |
cttgtttgactcacaacatt---ttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttcaactctaacaataatctaagttataataa |
97 |
Q |
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| T |
18019099 |
cttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttcaactctaacaataatctaagttataataa |
18019000 |
T |
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| Q |
98 |
ctcacgtgttgtaccaatcagatctaaccatcaatcagtatattttactata |
149 |
Q |
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| T |
18018999 |
ctcacgtgttgtaccaatcagatctaacaatcaatcattatattttactata |
18018948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 18018648 - 18018584
Alignment:
| Q |
164 |
agtaatttactataaagttttgtatggtcacaatctttttaatcacattgtttgaccacacaaac |
228 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18018648 |
agtaatttactacaaagttttatatggtcacaatctttttaatcacattgtttgaccacacaaac |
18018584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 3060217 - 3060368
Alignment:
| Q |
1 |
cttgtttgactcacaacatt---ttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttcaactctaacaataatctaagttataataa |
97 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3060217 |
cttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttcaactctaacaataatctaagttataataa |
3060316 |
T |
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| Q |
98 |
ctcacgtgttgtaccaatcagatctaaccatcaatcagtatattttactata |
149 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
3060317 |
ctcacgtgttgtaccaatcagatctaacaatcaatcattatattttactata |
3060368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 3060668 - 3060732
Alignment:
| Q |
164 |
agtaatttactataaagttttgtatggtcacaatctttttaatcacattgtttgaccacacaaac |
228 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3060668 |
agtaatttactacaaagttttatatggtcacaatctttttaatcacattgtttgaccacacaaac |
3060732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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