View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_29 (Length: 225)
Name: NF18306_low_29
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 7175434 - 7175629
Alignment:
| Q |
14 |
caaaggaataataaaaaatagataacagattaaaacaaattttggattaaagataaatgaagaaaagtataattaaacctatatttttaaactgcagtaa |
113 |
Q |
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| T |
7175434 |
caaaggaataataaaaaatagataagagattagaacaaattttggattaaagataaatgaagaaaagtataattaaacctatatttttaaactgcagtaa |
7175533 |
T |
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| Q |
114 |
aaatcgaatttagaataaatagcatgcttatatctttcgaaagcaacaagtacttgtagtctagtaatgtgggaatacattttgtcactcattcgt |
209 |
Q |
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| T |
7175534 |
aaatcgaatttagaataaatagcatgcttatatcttccgaaagcaacaagtacttgtagtctagtaatgtgggaatacattttgtcactcattcgt |
7175629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 7187034 - 7187147
Alignment:
| Q |
78 |
aagtataattaaacctatatttttaaactgcagtaaaaatcgaatttagaat--aaatagcatgcttatatctttcgaaagcaacaagtacttgtagtct |
175 |
Q |
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|||||||||||||||||| |||||| ||||| || | |||| |||||||| | ||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
7187034 |
aagtataattaaacctattagtttaaagtgcaggaatattcga-tttagaatggagatatcatgcttatatctttcgaaaacaacaagtacttgttgtct |
7187132 |
T |
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| Q |
176 |
agtaatgtgggaata |
190 |
Q |
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| T |
7187133 |
agttatgtgggaata |
7187147 |
T |
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