View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_7 (Length: 479)
Name: NF18306_low_7
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 24828093 - 24827635
Alignment:
| Q |
1 |
ctgagaaatgattaaaagaaagcttaacttcttctaagaaaaccaaacctgtaagatttggcaataatccaaaaagtgcattgtttctgaaatcaatttg |
100 |
Q |
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| T |
24828093 |
ctgagaaatgattaaaagaaagcttaacttcttctaagaaaaccaaacctgtaagatttggcaataatccaaaaagtgcattgtttctgaaatcaatttg |
24827994 |
T |
|
| Q |
101 |
cctcaagaaagttatgttttgaagaaatgttgaaggtaaatagccactaaggttgactccttgaattgtaatatgaacaacatgccaatttgaacaagtg |
200 |
Q |
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| T |
24827993 |
cctcaagaaagttatgttttgaagaaatgttgaaggtaaatagccactgaggttgactccttgaattgtaatatgaacaacatgccaatttgaacaagcg |
24827894 |
T |
|
| Q |
201 |
ataccaaaccatatactaaggttgttttctatacaaggtggtcctgtccaatttctatgcaaatttatagatgaagaatttaaagaatcccttatgagta |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24827893 |
attccaaaccatatactaaggttgttttctatacaaggtggtcctgtccaatttctatgcaaatttatagatgaagaatttaatgaatcccttatgagta |
24827794 |
T |
|
| Q |
301 |
ataaagcatctctttcttgtggatgaaaatccttgatttcaatttcaatacacaagactatgttcaatgaaagaatgaacaaaaacatatataaaaaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24827793 |
ataaagcatctctttcttgtggatgaaaatccttgatttcaatttcaatacacaagactatgttcaatgaaagaatgaacaaaaacatatataaaaaggt |
24827694 |
T |
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| Q |
401 |
tatgtcaaagaccaagctcatgatgatgttacataaaatttcttaaaacatgagatttggaa |
462 |
Q |
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| T |
24827693 |
tatgtcaaagaccaagctcat---gatgttacataaaatttcttaaaacatgagatttggaa |
24827635 |
T |
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