View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_8 (Length: 442)
Name: NF18306_low_8
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 46 - 432
Target Start/End: Complemental strand, 44660510 - 44660127
Alignment:
| Q |
46 |
atcaggacgaaaaaataaaagtcgataattttgtagctgacgaacaaatttatttaaccctaacatataaaacaataattatacgtggaatattttctcc |
145 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
44660510 |
atcaggacgaaaaaataaaagtcgataattttg---ctgacgaacaaatttatttaaccctaacatataaaataataattatacatggaatattttctcc |
44660414 |
T |
|
| Q |
146 |
gacaaggcttcatatttgtaaatttcaagatttcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctccaaggatta |
245 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660413 |
gacaaggcttcatatttgtaaatttcaatatttcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctccaaggatta |
44660314 |
T |
|
| Q |
246 |
gcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaa |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660313 |
gcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaa |
44660214 |
T |
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| Q |
346 |
tgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacgggtagccgttgtgggcatgctcccatcttcctttg |
432 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44660213 |
tgcactatctagagatgttgacatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttg |
44660127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 243 - 432
Target Start/End: Complemental strand, 44683461 - 44683272
Alignment:
| Q |
243 |
ttagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacat |
342 |
Q |
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|||||||||||||||| || | ||||||||| |||||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
44683461 |
ttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttgggatgcccatctccttgcggtgttgtgataactcgtttgaaatacat |
44683362 |
T |
|
| Q |
343 |
gaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacgggtagccgttgtgggcatgctcccatcttcctttg |
432 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44683361 |
gagtgcgatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttg |
44683272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 44668804 - 44668699
Alignment:
| Q |
228 |
aataggctccaaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataac |
327 |
Q |
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||||||||||||| |||| ||||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||| |||||||||||||| |||| |
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| T |
44668804 |
aataggctccaagcattaccttcaagaagtccattggaagtataaccatttcaggccataagtttttgggatgtccaattccttgtggtgttttattaac |
44668705 |
T |
|
| Q |
328 |
tcgttt |
333 |
Q |
| |
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|||||| |
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| T |
44668704 |
tcgttt |
44668699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 44640488 - 44640386
Alignment:
| Q |
231 |
aggctccaaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcg |
330 |
Q |
| |
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|||||||||| |||| ||||||||| ||||| | ||| |||| || || |||||||||||| ||||||| ||| |||||||||||||| ||||||| |
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| T |
44640488 |
aggctccaagcattaccttcaagaagcccattggaagtataactatctctggccataagtttctgggatgtccaattccttgtggtgttttattaactcg |
44640389 |
T |
|
| Q |
331 |
ttt |
333 |
Q |
| |
|
||| |
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|
| T |
44640388 |
ttt |
44640386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 138 - 432
Target Start/End: Original strand, 29341362 - 29341656
Alignment:
| Q |
138 |
ttttctccgacaaggcttcatatttgtaaatttcaagatttcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctcc |
237 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||||| |||||||||||||||||| ||| |||||||||||| |||| |||||| ||||||| |
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| T |
29341362 |
ttttctccaacaaggcttcatatttttcaatttaaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctct |
29341461 |
T |
|
| Q |
238 |
aaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaa |
337 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29341462 |
aaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaa |
29341561 |
T |
|
| Q |
338 |
tacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacgggtagccgttgtgggcatgctcccatcttcctttg |
432 |
Q |
| |
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|| || |||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||| ||||| |
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| T |
29341562 |
tatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctccaatcttactttg |
29341656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 138 - 432
Target Start/End: Original strand, 29357389 - 29357683
Alignment:
| Q |
138 |
ttttctccgacaaggcttcatatttgtaaatttcaagatttcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctcc |
237 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||| |||||||| |
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| T |
29357389 |
ttttctctaacaaggtttcatatttttaaatttcaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattttataggctct |
29357488 |
T |
|
| Q |
238 |
aaggattagcttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaa |
337 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29357489 |
aaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccatttccttgtggtgttttgataactcgtttgaaa |
29357588 |
T |
|
| Q |
338 |
tacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacgggtagccgttgtgggcatgctcccatcttcctttg |
432 |
Q |
| |
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|| || |||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||||| |
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| T |
29357589 |
tatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatctttctttg |
29357683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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