View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18307_high_1 (Length: 483)

Name: NF18307_high_1
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18307_high_1
NF18307_high_1
[»] chr6 (3 HSPs)
chr6 (298-469)||(24040710-24040881)
chr6 (176-298)||(24040560-24040681)
chr6 (326-469)||(24014181-24014324)
[»] chr4 (9 HSPs)
chr4 (301-469)||(35107035-35107203)
chr4 (326-469)||(35072682-35072825)
chr4 (321-467)||(35097859-35098005)
chr4 (321-467)||(35098148-35098294)
chr4 (325-440)||(36935858-36935974)
chr4 (321-461)||(36296450-36296590)
chr4 (327-464)||(36940478-36940615)
chr4 (323-467)||(36961406-36961551)
chr4 (333-451)||(36953644-36953768)
[»] chr5 (2 HSPs)
chr5 (365-461)||(34919141-34919237)
chr5 (345-454)||(26579147-26579256)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 298 - 469
Target Start/End: Original strand, 24040710 - 24040881
Alignment:
Q  298 acagagtaactaagcttgttctgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacac 397  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24040710 acagagtaactaaatttgttccgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaatac 24040809  T
Q  398 cattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040810 cattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttc 24040881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 24040560 - 24040681
Alignment:
Q  176 attaagaagatcaacaactatttaaagcgatttacttattttatttaggcattaacattgcacatacatcatcatgtctcttgcacaagcaaacatcaca 275  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040560 attaagaagatcaacaactatttaaagcgatttacttattt-atttaggcattaacattgcacatacatcatcatgtctcttgcacaagcaaacatcaca 24040658  T
Q  276 caaaaggtaaacattacagacga 298  Q
    |||||||||||||||||||||||    
T  24040659 caaaaggtaaacattacagacga 24040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 326 - 469
Target Start/End: Original strand, 24014181 - 24014324
Alignment:
Q  326 aaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 425  Q
    |||||||||| || |||| ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  426 cattttcgcattctctggtaatctaaacctcctcatgaattttc 469  Q
    |||||||||||| || || || || || ||||||||||| ||||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttc 24014324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 301 - 469
Target Start/End: Complemental strand, 35107203 - 35107035
Alignment:
Q  301 gagtaactaagcttgttctgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccat 400  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  || |||| ||||||||| |  |||||||||||||||||||||| |||||||||||    
T  35107203 gagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccat 35107104  T
Q  401 tctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttc 469  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107103 tctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttc 35107035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 326 - 469
Target Start/End: Original strand, 35072682 - 35072825
Alignment:
Q  326 aaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 425  Q
    |||||||||| || |||| ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  426 cattttcgcattctctggtaatctaaacctcctcatgaattttc 469  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttc 35072825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 321 - 467
Target Start/End: Complemental strand, 35098005 - 35097859
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  35098005 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 35097906  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcatgaattt 467  Q
    || ||||||||||||||||| || ||||| |||||||||||||||||    
T  35097905 tggtccattttcgcattctcaggcaatctgaacctcctcatgaattt 35097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 321 - 467
Target Start/End: Complemental strand, 35098294 - 35098148
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  35098294 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 35098195  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcatgaattt 467  Q
    || ||||||||||||||||| || ||||| |||||||||||||||||    
T  35098194 tggtccattttcgcattctcaggcaatctgaacctcctcatgaattt 35098148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 440
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  325 taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctcc-attgcagctttcacttga 423  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| |  || || || ||||||||||||||||||||| ||||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  424 tccattttcgcattctc 440  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 461
Target Start/End: Original strand, 36296450 - 36296590
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||| | ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||     
T  36296450 agttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacc 36296549  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcat 461  Q
    |||||||| || ||||| || || ||||| |||||||||||    
T  36296550 tgatccatcttggcattttcgggcaatctgaacctcctcat 36296590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 464
Target Start/End: Original strand, 36940478 - 36940615
Alignment:
Q  327 accagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 426  Q
    |||||||||||||||||| || |||| | | ||||| |  ||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  427 attttcgcattctctggtaatctaaacctcctcatgaa 464  Q
    ||||| |||||||| || ||||| || |||||||||||    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaa 36940615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 467
Target Start/End: Complemental strand, 36961551 - 36961406
Alignment:
Q  323 tttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattct-ccattgcagctttcactt 421  Q
    ||||| ||||||||||||||||||| |||  ||| || || |||||||||||||| | ||| ||||||||||||||||||| ||||    || ||||| |    
T  36961551 tttaatcagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacct 36961452  T
Q  422 gatccattttcgcattctctggtaatctaaacctcctcatgaattt 467  Q
    ||||||| || ||||||||||  ||||||||| |||||||||||||    
T  36961451 gatccatcttagcattctctgccaatctaaacttcctcatgaattt 36961406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 451
Target Start/End: Original strand, 36953644 - 36953768
Alignment:
Q  333 gatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattc--------tccattgcagctttcacttgat 424  Q
    |||||||||| ||||||||| |||||||| ||| ||||| ||||| ||||| ||||  ||||||||||||        ||||||||||||||||||||||    
T  36953644 gatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttacag--agaacaccattctccatcagtccattgcagctttcacttgat 36953741  T
Q  425 ccattttcgcattctctggtaatctaa 451  Q
    || |||| ||||| || || |||||||    
T  36953742 ccgttttagcattgtcaggcaatctaa 36953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 461
Target Start/End: Complemental strand, 34919237 - 34919141
Alignment:
Q  365 cttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 461  Q
    ||||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919237 cttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 26579256 - 26579147
Alignment:
Q  345 cttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggt 444  Q
    |||||| | |||||||||||| ||  ||||||| ||| | ||||| || ||||||||||||||  |||||||||| | |||||  || |||||||| ||     
T  26579256 cttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggc 26579157  T
Q  445 aatctaaacc 454  Q
    || |||||||    
T  26579156 aacctaaacc 26579147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University