View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_high_16 (Length: 233)
Name: NF18307_high_16
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_high_16 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 36368339 - 36368554
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36368339 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
36368438 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttcactactgcagtcacagat |
217 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36368439 |
gaattctatcaatcgatcgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccgctgtttcactactgcagtcacagat |
36368538 |
T |
|
| Q |
218 |
aaatagcaccgacgtt |
233 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
36368539 |
aaatagcaccaacgtt |
36368554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 36432970 - 36433182
Alignment:
| Q |
21 |
tccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaa |
120 |
Q |
| |
|
||||| |||||||| || ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36432970 |
tccacatctcgctatgtaggaatttggtactacaatttgtcaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaa |
36433069 |
T |
|
| Q |
121 |
ttctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttcactactgcagtcacagataaa |
220 |
Q |
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||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| | ||| ||||||||||| |
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| T |
36433070 |
ttctatcaatcaacccaaatggaaatctagttctcaacaacaaccttagcaccattcccatttggtctaccgatgtttcactccagcaatcacagataaa |
36433169 |
T |
|
| Q |
221 |
tagcaccgacgtt |
233 |
Q |
| |
|
||||||||||||| |
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| T |
36433170 |
tagcaccgacgtt |
36433182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 36410944 - 36411126
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
36410944 |
aagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctg |
36411043 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttca |
200 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
36411044 |
gaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttca |
36411126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 36416275 - 36416457
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
36416275 |
aagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctg |
36416374 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttca |
200 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
36416375 |
gaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttca |
36416457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 36372958 - 36373164
Alignment:
| Q |
21 |
tccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaa |
120 |
Q |
| |
|
||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||| |
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|
| T |
36372958 |
tccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacgatacttctggaa |
36373057 |
T |
|
| Q |
121 |
ttctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttcactactgcagtcacagataaa |
220 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| || ||||| | ||| |
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| T |
36373058 |
ttctatcaatcgatccaaatgaaaatctagtactcaaccacaaccgtagcaccattcccatttggtctaccgatgtttcattaccacaatcacaaagaaa |
36373157 |
T |
|
| Q |
221 |
tagcacc |
227 |
Q |
| |
|
||||||| |
|
|
| T |
36373158 |
tagcacc |
36373164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 36396694 - 36396863
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
36396694 |
aagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctg |
36396793 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtc |
187 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| ||| ||||||||||||||| |||||| |||||||| |
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|
| T |
36396794 |
gaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattccaatttggtc |
36396863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 36403627 - 36403809
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |
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|
| T |
36403627 |
aagtccgcctctcgctatgttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaacagagatgctcccatcaatgacacttctg |
36403726 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttca |
200 |
Q |
| |
|
| ||| |||| || |||| ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
36403727 |
ggattttatccattgacccaaatggaaatctagtaattcaccacaaccatagcaccattcccatttggtctaccgatgtttca |
36403809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 36425110 - 36425292
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| || |||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
36425110 |
aagtccacctctcgctatgttggaatttggtactactatttgcttttccaaactgttgtttgggttgcaaatagtgatgctcccatcaatgacacttctg |
36425209 |
T |
|
| Q |
118 |
gaattctatcaatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttca |
200 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
36425210 |
gaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttca |
36425292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 36386920 - 36387118
Alignment:
| Q |
27 |
tctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctat |
126 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||| |||||| ||| |
|
|
| T |
36386920 |
tctcgctatgttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacaatacttccggaattttat |
36387019 |
T |
|
| Q |
127 |
caatcgaccgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccggtgtttcactactgcagtcacagataaatagcac |
226 |
Q |
| |
|
| ||||||| ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||| ||||||| | | ||| ||||| | ||||||||| |
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|
| T |
36387020 |
c-atcgacccaaatggaaatctagtactccaccacaacctaagcaccattcccatttggtctaccaatgtttcattcccgcaatcacaaagaaatagcac |
36387118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 55676599 - 55676492
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctg |
117 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55676599 |
aagtccatctctcgtcacgttggaatctggtacaacaatttgccaatacacactgttgtttgggttgcaaatagagatgctccaatcaatgacacttctg |
55676500 |
T |
|
| Q |
118 |
gaattcta |
125 |
Q |
| |
|
||| |||| |
|
|
| T |
55676499 |
gaaatcta |
55676492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 34712306 - 34712387
Alignment:
| Q |
69 |
actgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaatcgaccgaaatggaaatctag |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
34712306 |
actgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaattgaccaaaatggaaatctag |
34712387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34712467 - 34712418
Alignment:
| Q |
18 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatcca |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34712467 |
aagtccacctctcgctacgttggaatctggtacaacaatttgccaatcca |
34712418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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