View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18307_high_2 (Length: 480)

Name: NF18307_high_2
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18307_high_2
NF18307_high_2
[»] chr8 (1 HSPs)
chr8 (12-464)||(6473280-6473735)
[»] chr6 (8 HSPs)
chr6 (226-463)||(13608136-13608367)
chr6 (69-175)||(13607956-13608056)
chr6 (358-431)||(33361317-33361390)
chr6 (358-421)||(33412747-33412810)
chr6 (364-431)||(12782319-12782386)
chr6 (358-421)||(12785768-12785831)
chr6 (358-421)||(33060384-33060447)
chr6 (358-421)||(33390902-33390965)
[»] chr4 (8 HSPs)
chr4 (305-463)||(31244188-31244346)
chr4 (358-421)||(31496144-31496207)
chr4 (358-462)||(31160061-31160165)
chr4 (354-425)||(31482036-31482107)
chr4 (358-421)||(31501314-31501377)
chr4 (358-431)||(31020690-31020763)
chr4 (358-431)||(31030571-31030644)
chr4 (358-411)||(31476204-31476257)
[»] chr5 (1 HSPs)
chr5 (287-339)||(17599893-17599945)
[»] chr2 (1 HSPs)
chr2 (358-421)||(17437877-17437940)
[»] chr7 (1 HSPs)
chr7 (287-339)||(14723905-14723957)


Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 6473735 - 6473280
Alignment:
Q  12 ataggccctttgataaatgtaccgttgaaacttgaagaaaaagtagtggaagatgaaaccagaatatgttag---tgggaaattccaagggtgttgcata 108  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||| ||||    
T  6473735 ataggccctttgataaacgtaccgttgaaacgtgaagaaaaagtagtggaagataaaaccagaatatgttagcagtgggaaattccaagggtgttacata 6473636  T
Q  109 cgaatgttggtggaagctagctagcaagaaagaccctggaaaaggctcaaatgtacgaatactccaataactatttaagctgcaatataattcattgcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473635 cgaatgttggtggaagctagctagcaagaaagaccctggaaaaggctcaaatgtacgaatactccaataactatttaagctgcaatataattcattgcaa 6473536  T
Q  209 tgtaaagttagcatgttagtttcatagcaagcaacagtgcaaacaaaatacaaaatccttagcaagttagttttgggcctttggctttaacaatttcaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6473535 tgtaaagttagcatgttagtttcatagcaagcaacagtgcaaacaaaatacaaaatccttagcaagttagttttgggcctttggctttaacaatttgaat 6473436  T
Q  309 gactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcact 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473435 gactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcact 6473336  T
Q  409 gatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473335 gatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatat 6473280  T

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Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 226 - 463
Target Start/End: Original strand, 13608136 - 13608367
Alignment:
Q  226 agtttcatagcaagcaacagtgcaaacaaaatacaaaatccttagcaagttagttttgggcctttggctttaacaatttcaatgactcgtagtagcatcc 325  Q
    ||||||| |||||| |||||||||||| || ||||  ||||||||||||||||||||||        |||| |||||||||||| || ||||||||||||    
T  13608136 agtttcacagcaagaaacagtgcaaactaactacatcatccttagcaagttagttttgg--------cttttacaatttcaatggctagtagtagcatcc 13608227  T
Q  326 aaagtgtctcttcaaataggagga---aatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttgg 422  Q
    ||| ||||||||||  ||||||||   |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13608228 aaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttgg 13608327  T
Q  423 tgctcttcataaaaatcgcattgttgtcttcagggatgata 463  Q
     |||| ||||||||||  ||||||||  ||||| |||||||    
T  13608328 cgctc-tcataaaaatgacattgttgcattcagagatgata 13608367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 13607956 - 13608056
Alignment:
Q  69 accagaatatgttagtgggaaattccaagggtgttgcatacgaatgttggtggaagctagctagcaagaaagaccctggaaaaggctcaaatgtacgaat 168  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||||||| |||||    |||| |||||||||| |||||||||| |||||   |||||||    
T  13607956 accaaaatatgttagtggaaaattccaaggatgttacatacgaatgtttgtgga----agctggcaagaaagatcctggaaaagactcaa--ctacgaat 13608049  T
Q  169 actccaa 175  Q
    |||||||    
T  13608050 actccaa 13608056  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 33361390 - 33361317
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 431  Q
    |||||||||||||| | |||| |||| |||||||| ||||||||||||||||||  |||||||| ||| |||||    
T  33361390 tatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttctttttgatgcccttca 33361317  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 33412810 - 33412747
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    |||||||||||||| | |||  |||| |||||||| |||||||||||||||||| |||||||||    
T  33412810 tatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttg 33412747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 431
Target Start/End: Complemental strand, 12782386 - 12782319
Alignment:
Q  364 gtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 431  Q
    ||||||||||||||  |||||  |||||| ||   ||||||||||||||||||||||||||| |||||    
T  12782386 gtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttca 12782319  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 12785831 - 12785768
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    ||||| ||||||||||||||| |||||  |||||| |||  ||||||||| |||||||||||||    
T  12785831 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttg 12785768  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 33060447 - 33060384
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  33060447 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 33060384  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 33390965 - 33390902
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    |||||||||||||| | ||| ||||| |||||||| ||||||||||||| ||||  ||||||||    
T  33390965 tatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttg 33390902  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 463
Target Start/End: Original strand, 31244188 - 31244346
Alignment:
Q  305 caatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaattt 404  Q
    ||||| || ||| |||||||| |||| ||||||||  || || ||||||||||||||||||||||||||||||| |||| |  ||||| |||||||||||    
T  31244188 caatggcttgtaatagcatccgaagtatctcttcacctaagatgaaatggaaatatgatgtgtttgtgagctttagaggtggcgacacacgcaacaattt 31244287  T
Q  405 cactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgata 463  Q
    ||||||||| ||||||||  |||| ||||||||  ||||||||  ||||||||||||||    
T  31244288 cactgatcacctttttggcactctccataaaaaaggcattgttaccttcagggatgata 31244346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 31496144 - 31496207
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    ||||| |||||||| | |||| |||| || ||||| ||||||||||||||||||||||||||||    
T  31496144 tatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttg 31496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 31160165 - 31160061
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcaggg 457  Q
    ||||| || |||||||||||| ||||| ||||||| | |||||||||  | ||||||||||||| ||| ||||| | |||  |||| ||||  |||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  458 atgat 462  Q
    |||||    
T  31160065 atgat 31160061  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 31482036 - 31482107
Alignment:
Q  354 gaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgc 425  Q
    ||||||||| ||||||||||| ||  | || || ||||| || ||||| |||||||||||||||||||||||    
T  31482036 gaaatatgacgtgtttgtgagtttctgtggtgatgacacacgtaacaaattcactgatcatctttttggtgc 31482107  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 31501314 - 31501377
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    ||||||| |||||| |  ||| |||| |||||||| ||||||||||||||| ||||||||||||    
T  31501314 tatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttg 31501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 31020763 - 31020690
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 431  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31020763 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31020690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 31030644 - 31030571
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 431  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31030644 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31030571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 31476204 - 31476257
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgat 411  Q
    ||||| ||||||||||||||  |||| ||||| || ||||||||||||||||||    
T  31476204 tatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgat 31476257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 17599945 - 17599893
Alignment:
Q  287 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 339  Q
    |||||||||| | ||| |||||| || ||||||||||||||||||||||||||    
T  17599945 ctttggcttttataatatcaatggctagtagtagcatccaaagtgtctcttca 17599893  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 17437877 - 17437940
Alignment:
Q  358 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 421  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  17437877 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 17437940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 14723905 - 14723957
Alignment:
Q  287 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 339  Q
    |||||||||| | ||| |||||| ||  |||||||||||||||||||||||||    
T  14723905 ctttggcttttataatatcaatggctaatagtagcatccaaagtgtctcttca 14723957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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