View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18307_low_10 (Length: 269)

Name: NF18307_low_10
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18307_low_10
NF18307_low_10
[»] chr6 (14 HSPs)
chr6 (11-250)||(26301887-26302129)
chr6 (15-99)||(19631745-19631829)
chr6 (15-97)||(11084120-11084202)
chr6 (47-96)||(7055351-7055400)
chr6 (45-93)||(6614034-6614082)
chr6 (15-69)||(4102894-4102948)
chr6 (47-93)||(6088910-6088956)
chr6 (47-96)||(8513232-8513281)
chr6 (47-102)||(4318959-4319014)
chr6 (47-97)||(5627389-5627439)
chr6 (47-93)||(30353494-30353540)
chr6 (47-96)||(3880075-3880124)
chr6 (47-100)||(21017248-21017301)
chr6 (50-94)||(20768087-20768131)
[»] chr4 (31 HSPs)
chr4 (12-97)||(2704510-2704595)
chr4 (47-94)||(51204580-51204627)
chr4 (15-93)||(2266824-2266902)
chr4 (47-97)||(3042609-3042659)
chr4 (15-93)||(9743590-9743668)
chr4 (47-97)||(30002787-30002837)
chr4 (47-97)||(35021198-35021248)
chr4 (47-99)||(32912743-32912795)
chr4 (47-99)||(34361654-34361706)
chr4 (47-95)||(38811813-38811861)
chr4 (47-95)||(53124287-53124335)
chr4 (50-96)||(35025754-35025800)
chr4 (47-97)||(38812260-38812310)
chr4 (15-97)||(54995767-54995849)
chr4 (47-97)||(55478058-55478108)
chr4 (47-100)||(4396321-4396374)
chr4 (47-102)||(4205109-4205164)
chr4 (47-94)||(4597994-4598041)
chr4 (50-97)||(5915802-5915849)
chr4 (50-97)||(50697240-50697287)
chr4 (47-97)||(9139245-9139295)
chr4 (47-93)||(20097491-20097537)
chr4 (47-93)||(27396618-27396664)
chr4 (48-94)||(37775670-37775716)
chr4 (50-95)||(28003152-28003197)
chr4 (32-93)||(33255501-33255562)
chr4 (47-96)||(37663902-37663951)
chr4 (47-96)||(42199728-42199777)
chr4 (47-95)||(39397918-39397966)
chr4 (47-95)||(46884197-46884245)
chr4 (47-95)||(55241267-55241315)
[»] chr3 (32 HSPs)
chr3 (15-95)||(47930634-47930714)
chr3 (12-94)||(19606879-19606961)
chr3 (15-95)||(49359596-49359676)
chr3 (15-97)||(40640602-40640684)
chr3 (14-92)||(4556543-4556622)
chr3 (15-97)||(38392596-38392678)
chr3 (15-96)||(45879466-45879547)
chr3 (47-94)||(29163839-29163886)
chr3 (47-96)||(26941397-26941446)
chr3 (47-100)||(48354927-48354980)
chr3 (47-95)||(37203058-37203106)
chr3 (50-97)||(22450957-22451004)
chr3 (47-97)||(35844315-35844365)
chr3 (47-93)||(46297899-46297945)
chr3 (47-93)||(53818509-53818555)
chr3 (11-96)||(18272188-18272272)
chr3 (47-95)||(20373433-20373481)
chr3 (57-97)||(39282642-39282682)
chr3 (47-94)||(11835743-11835790)
chr3 (11-81)||(7568683-7568753)
chr3 (47-97)||(21193595-21193645)
chr3 (47-97)||(42665541-42665591)
chr3 (47-97)||(46994787-46994837)
chr3 (47-97)||(47481511-47481561)
chr3 (47-93)||(54828837-54828883)
chr3 (47-97)||(55343421-55343471)
chr3 (47-96)||(3655339-3655388)
chr3 (47-95)||(4015451-4015499)
chr3 (14-94)||(32180714-32180794)
chr3 (15-55)||(44880831-44880871)
chr3 (47-95)||(44891498-44891545)
chr3 (47-95)||(51213118-51213166)
[»] chr2 (27 HSPs)
chr2 (11-95)||(41713164-41713248)
chr2 (11-97)||(34441885-34441971)
chr2 (15-94)||(42005390-42005469)
chr2 (15-91)||(18947566-18947642)
chr2 (11-98)||(6177772-6177859)
chr2 (11-93)||(41643874-41643956)
chr2 (46-97)||(19093411-19093462)
chr2 (15-96)||(39788545-39788626)
chr2 (46-97)||(29242292-29242343)
chr2 (47-97)||(4166920-4166970)
chr2 (47-97)||(18494423-18494473)
chr2 (11-81)||(18779365-18779435)
chr2 (15-96)||(19073356-19073438)
chr2 (47-95)||(19313852-19313900)
chr2 (47-95)||(22963400-22963448)
chr2 (47-95)||(22998029-22998077)
chr2 (47-95)||(26357577-26357625)
chr2 (19-83)||(27138992-27139056)
chr2 (47-95)||(37905709-37905756)
chr2 (47-95)||(41465509-41465557)
chr2 (49-96)||(5881533-5881580)
chr2 (47-94)||(13711465-13711512)
chr2 (49-95)||(35958909-35958955)
chr2 (47-97)||(41960881-41960931)
chr2 (47-96)||(4264232-4264281)
chr2 (11-64)||(18059326-18059379)
chr2 (47-96)||(19424783-19424832)
[»] chr8 (19 HSPs)
chr8 (14-97)||(4108879-4108962)
chr8 (15-86)||(23176731-23176802)
chr8 (26-95)||(28220934-28221003)
chr8 (15-86)||(8151380-8151451)
chr8 (47-96)||(38110352-38110401)
chr8 (47-95)||(13307622-13307670)
chr8 (47-97)||(34894964-34895014)
chr8 (47-96)||(1150248-1150297)
chr8 (47-96)||(30654726-30654775)
chr8 (47-95)||(15009241-15009289)
chr8 (47-102)||(1204919-1204974)
chr8 (47-93)||(465843-465889)
chr8 (47-97)||(36695109-36695159)
chr8 (11-96)||(7290719-7290803)
chr8 (47-96)||(16447018-16447067)
chr8 (47-96)||(27082981-27083030)
chr8 (47-100)||(41191019-41191071)
chr8 (47-95)||(6098661-6098709)
chr8 (47-95)||(41362517-41362565)
[»] chr5 (30 HSPs)
chr5 (15-97)||(22616492-22616573)
chr5 (15-95)||(26411293-26411377)
chr5 (14-103)||(41417546-41417635)
chr5 (11-94)||(10237415-10237498)
chr5 (47-94)||(31705738-31705785)
chr5 (32-94)||(21320752-21320814)
chr5 (47-97)||(36860421-36860471)
chr5 (11-96)||(36055838-36055923)
chr5 (47-99)||(5112440-5112492)
chr5 (47-95)||(7693230-7693278)
chr5 (47-95)||(36866762-36866810)
chr5 (46-97)||(12910348-12910399)
chr5 (50-97)||(25513769-25513816)
chr5 (47-94)||(32563150-32563197)
chr5 (47-98)||(38528363-38528414)
chr5 (47-97)||(8742014-8742064)
chr5 (15-93)||(33163515-33163593)
chr5 (48-94)||(35504168-35504214)
chr5 (47-96)||(9200232-9200281)
chr5 (50-95)||(14409456-14409501)
chr5 (47-95)||(5829897-5829945)
chr5 (60-96)||(17158173-17158209)
chr5 (50-97)||(13887235-13887282)
chr5 (47-97)||(19119857-19119907)
chr5 (47-97)||(22974209-22974259)
chr5 (47-100)||(35826610-35826663)
chr5 (47-96)||(35933901-35933950)
chr5 (47-95)||(26317811-26317859)
chr5 (47-83)||(27318614-27318650)
chr5 (47-95)||(40133385-40133433)
[»] chr1 (21 HSPs)
chr1 (15-96)||(13876887-13876968)
chr1 (47-96)||(18422646-18422695)
chr1 (47-96)||(19899901-19899950)
chr1 (15-79)||(16127536-16127600)
chr1 (47-95)||(23999343-23999391)
chr1 (48-95)||(42721035-42721082)
chr1 (47-97)||(1547281-1547331)
chr1 (46-96)||(10182139-10182189)
chr1 (47-96)||(2959743-2959792)
chr1 (47-95)||(27227609-27227657)
chr1 (50-97)||(4150490-4150537)
chr1 (47-98)||(16415638-16415689)
chr1 (47-97)||(15382927-15382977)
chr1 (11-41)||(17695977-17696007)
chr1 (47-97)||(32267028-32267078)
chr1 (47-97)||(37619028-37619078)
chr1 (45-95)||(43579242-43579292)
chr1 (15-96)||(16132474-16132555)
chr1 (47-96)||(30254853-30254902)
chr1 (47-95)||(27267329-27267376)
chr1 (47-95)||(38823210-38823258)
[»] chr7 (28 HSPs)
chr7 (11-102)||(4618719-4618810)
chr7 (15-95)||(4902340-4902420)
chr7 (11-95)||(23402335-23402419)
chr7 (15-77)||(5781536-5781598)
chr7 (15-90)||(7742924-7742999)
chr7 (47-97)||(17842724-17842774)
chr7 (47-97)||(32821191-32821241)
chr7 (19-97)||(40381938-40382016)
chr7 (47-96)||(32432431-32432480)
chr7 (47-95)||(6546494-6546542)
chr7 (47-95)||(27283719-27283767)
chr7 (47-95)||(37109847-37109895)
chr7 (47-95)||(37346997-37347045)
chr7 (15-86)||(22955280-22955351)
chr7 (47-94)||(38258521-38258568)
chr7 (47-93)||(23111167-23111213)
chr7 (47-96)||(31579207-31579256)
chr7 (47-95)||(4582894-4582942)
chr7 (47-94)||(24211717-24211764)
chr7 (50-96)||(241024-241070)
chr7 (47-93)||(8299192-8299238)
chr7 (47-97)||(18797302-18797352)
chr7 (47-97)||(26524465-26524515)
chr7 (47-96)||(21991610-21991659)
chr7 (47-95)||(5657619-5657667)
chr7 (47-95)||(12165727-12165775)
chr7 (47-95)||(31520861-31520909)
chr7 (50-94)||(48928704-48928748)
[»] scaffold0002 (2 HSPs)
scaffold0002 (47-97)||(408706-408756)
scaffold0002 (47-96)||(133-182)
[»] scaffold0200 (1 HSPs)
scaffold0200 (11-96)||(24781-24866)
[»] scaffold0009 (2 HSPs)
scaffold0009 (47-97)||(100819-100869)
scaffold0009 (47-96)||(42347-42396)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26301887 - 26302129
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttatagttgtat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26301887 atgaattaaatacataaatattcaatgattggtcatttaacttcacgaaaaaaatcatttttatgacttcaccatataattttccttgttgtagttgtat 26301986  T
Q  111 at-tttatgtcttaaatatccaacagctatatccgttttgttactttaattattggtactcaagttcattaataaccaattatgctttacttttagtcta 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  26301987 atctttatgtcttaaatatccaacagctatatccgttttgttactttaattattggtactcaagttcattaattaccaattatgctttactttaagtcta 26302086  T
Q  210 attttataatgcag--acgtcatacaagttttgtattatgtac 250  Q
    ||| ||||||||||  |||||||||||||||||||| ||||||    
T  26302087 attctataatgcagacacgtcatacaagttttgtatcatgtac 26302129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 19631829 - 19631745
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgt 99  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  19631829 attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaattttccttgt 19631745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 11084120 - 11084202
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||    
T  11084120 attaaatacataaatattcaatgattggtcatttaactttaccagaaaagttattttcatgacttcaccatagaattttcctt 11084202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 7055351 - 7055400
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  7055351 ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcct 7055400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 6614034 - 6614082
Alignment:
Q  45 atttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  6614034 atttaacttcaccagaaaagtcattcttatgatttcaccatataatttt 6614082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 4102894 - 4102948
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatt 69  Q
    |||||||||| |||| |||||||||| | ||||||||||||||| ||||||||||    
T  4102894 attaaatacacaaatgttcaatgattagacatttaacttcaccaaaaaaatcatt 4102948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 6088956 - 6088910
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||    
T  6088956 ttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 8513281 - 8513232
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||||||    
T  8513281 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 4318959 - 4319014
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttat 102  Q
    |||||||||||| |||| ||||| | |||||||||||||| |||||||||| ||||    
T  4318959 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctttttat 4319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 5627439 - 5627389
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| ||||| ||||||||||||| || ||||||||||    
T  5627439 ttaacttcaccaaaaaagtcattcttatgacttcaccttagaattttcctt 5627389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 30353494 - 30353540
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  30353494 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 3880075 - 3880124
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||| ||||| |  ||||||||||||| |||||||||    
T  3880075 ttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttcct 3880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 21017248 - 21017301
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgtt 100  Q
    |||||||||||| |||| |||||||  |||||||||| ||||||||| ||||||    
T  21017248 ttaacttcaccaaaaaagtcattttcgtgacttcaccgtataatttttcttgtt 21017301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 20768131 - 20768087
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||    
T  20768131 acttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 2704595 - 2704510
Alignment:
Q  12 tgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  2704595 tgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcctt 2704510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 51204627 - 51204580
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  51204627 ttaacttcaccagaaaagtcatttttatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 2266824 - 2266902
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    |||||||||| ||||  ||||||||||   |||||||||||| |||||| ||||| | |||||||||||||||||||||    
T  2266824 attaaatacacaaatgctcaatgattgacgatttaacttcactagaaaagtcattatcatgacttcaccatataatttt 2266902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 3042659 - 3042609
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  3042659 ttaacttcaccaaaaaaatcatttttatgatttcaccatagaattttcctt 3042609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 9743668 - 9743590
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    |||||||||| |||| |||||| ||||||||||||| ||||||| |||| ||||||  ||||||| |||||| ||||||    
T  9743668 attaaatacacaaatgttcaataattggtcatttaatttcaccaaaaaagtcatttacatgactttaccatagaatttt 9743590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 30002787 - 30002837
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  30002787 ttaacttcaccagaaaaatcattttaatgacttcaccatagagttttcctt 30002837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 35021198 - 35021248
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  35021198 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 35021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 32912743 - 32912795
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgt 99  Q
    |||||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  32912743 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttccttgt 32912795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 34361654 - 34361706
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgt 99  Q
    |||||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  34361654 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttccttgt 34361706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 38811861 - 38811813
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  38811861 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 38811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 53124335 - 53124287
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  53124335 ttaacttcaccaaaaaaatcattttaatgacttcatcatataattttcc 53124287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 35025754 - 35025800
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||||    
T  35025754 acttcaccagaaaaatcattttcatgacttcagcatagaattttcct 35025800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 38812260 - 38812310
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  38812260 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 38812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 54995767 - 54995849
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||  |||| | |||||||||| ||||||||||||||| |||| ||||| | ||||||||| | || ||||||||||    
T  54995767 attaaatacgcaaatgtacaatgattggccatttaacttcaccaaaaaagtcattatcatgacttcatcgtagaattttcctt 54995849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 55478058 - 55478108
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||||||||    
T  55478058 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctt 55478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4396374 - 4396321
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgtt 100  Q
    |||||||||| | |||| |||||||||||||||||| ||| |||||||||||||    
T  4396374 ttaacttcactaaaaaagtcatttttatgacttcactatagaattttccttgtt 4396321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 4205164 - 4205109
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttat 102  Q
    ||||||||| ||||||| |||||||  ||||||||||||| |||||||||| ||||    
T  4205164 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctttttat 4205109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 4598041 - 4597994
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||||    
T  4598041 ttaacttcaccagaaaagtcattctaatgacttcaccataaaattttc 4597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 5915802 - 5915849
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||||| | |||||||||||| ||||| ||||    
T  5915802 acttcaccagaaaaatcattttaacgacttcaccatagaatttccctt 5915849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 50697287 - 50697240
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||| | |||||||||||||||||||||||| || ||||||||||    
T  50697287 acttcactaaaaaaatcatttttatgacttcaccgtagaattttcctt 50697240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 9139295 - 9139245
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| ||| ||| |||||||||||||| ||||||||||    
T  9139295 ttaacttcaccaaaaaagtcaatttcatgacttcaccatagaattttcctt 9139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 20097491 - 20097537
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  20097491 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 27396664 - 27396618
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||    
T  27396664 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 37775716 - 37775670
Alignment:
Q  48 taacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||| |||||||||||| ||||||||||| || |||||||    
T  37775716 taacttcaccaaaaaaatcattttaatgacttcaccgtagaattttc 37775670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 28003152 - 28003197
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||| ||||| | |||||||||||||| ||||||||    
T  28003152 acttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 33255562 - 33255501
Alignment:
Q  32 tcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||| ||||| ||||||||||||||| |||| | ||| |  ||||||||||||||||||||    
T  33255562 tcaataattggccatttaacttcaccaaaaaagtgattctcgtgacttcaccatataatttt 33255501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 37663902 - 37663951
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  37663902 ttaacttcatcaaaaaagtcattcttatgacttcaccatagaattttcct 37663951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 42199777 - 42199728
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||||| |||||| ||||||||| | |||||||    
T  42199777 ttaacttcaccaaaaaaatcattcttatgatttcaccatagatttttcct 42199728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 39397966 - 39397918
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||| | |||||||||||||| ||||||||    
T  39397966 ttaacttcaccataaaagtcattctaatgacttcaccatagaattttcc 39397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 46884197 - 46884245
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||| ||| |||| |||||||||||||||||| ||| ||||||||    
T  46884197 ttaacttcgccaaaaaagtcatttttatgacttcactatagaattttcc 46884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 55241267 - 55241315
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||||| ||||| | |||||||||||||| ||||||||    
T  55241267 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 55241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 47930634 - 47930714
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  47930634 attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 19606879 - 19606961
Alignment:
Q  12 tgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||||| ||||  ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  19606879 tgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 49359596 - 49359676
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||| |||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||| ||||||||    
T  49359596 attaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcc 49359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 40640602 - 40640684
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||| ||||  ||||||||||  |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  40640602 attaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 4556622 - 4556543
Alignment:
Q  14 aattaaatacataaatattcaatgattggtcatt-taacttcaccagaaaaatcatttttatgacttcaccatataattt 92  Q
    ||||||||||| ||||| |||||||||||||||  ||||||||| |||||| ||||||| |||||||||||||| |||||    
T  4556622 aattaaatacacaaatactcaatgattggtcatagtaacttcacgagaaaagtcattttcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 38392596 - 38392678
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||| |||| |||||||| ||  ||||||||||||||| |||| ||||| | |||||||||||||||||||| ||||    
T  38392596 attaaatacacaaatgttcaatgactgaccatttaacttcaccaaaaaagtcattctcatgacttcaccatataatttccctt 38392678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 45879466 - 45879547
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||| ||||  ||||||||||| |||||||||| ||||||||| ||||| | ||||||||| |||| |||||||||    
T  45879466 attaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatgacttcagcatagaattttcct 45879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 29163886 - 29163839
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  29163886 ttaacttcaccagaaaaatcattttaatgacttcaccataaaattttc 29163839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 26941397 - 26941446
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  26941397 ttaacttcaccaaaaaaatcattcttatgacttcaccatagaattttcct 26941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 48354980 - 48354927
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgtt 100  Q
    |||||||||||| |||||||||| | |||||||||||||| |||||||||||||    
T  48354980 ttaacttcaccataaaaatcattctcatgacttcaccatagaattttccttgtt 48354927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37203106 - 37203058
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  37203106 ttaacttcatcaaaaaaatcatttttatgacttcaccatagaattttcc 37203058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 22451004 - 22450957
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||    
T  22451004 acttcaccagaaaaatcattctcatgacttcaccatagaattttcctt 22450957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 35844365 - 35844315
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  35844365 ttaacttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 35844315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 46297899 - 46297945
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  46297899 ttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 53818509 - 53818555
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||    
T  53818509 ttaacttcaccagaaaaatcattctcatgacttcaccataaaatttt 53818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 18272188 - 18272272
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||||| |||| ||||||||||||  | ||||| |||  |||||| ||||| | ||||||||||| ||||||||||||    
T  18272188 atgaattaaatacacaaatgttcaatgattgg-gagttaacgtcattagaaaagtcattctcatgacttcaccgtataattttcct 18272272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 20373433 - 20373481
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||| |||||||||||| ||| ||||||||    
T  20373433 ttaacttcaccaaaaaaatcattcttatgacttcactataaaattttcc 20373481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 39282682 - 39282642
Alignment:
Q  57 cagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  39282682 cagaaaaatcattttcatgacttcaccatagaattttcctt 39282642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 11835743 - 11835790
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||| |||||||||| | |||||||||||||| |||||||    
T  11835743 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttc 11835790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 7568683 - 7568753
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttca 81  Q
    |||||||||||||| ||||  |||||||||   ||||||||||||||| |||| | ||||| |||||||||    
T  7568683 atgaattaaatacacaaatgctcaatgatttaccatttaacttcaccaaaaaagtaattttcatgacttca 7568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 21193645 - 21193595
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||| | ||||||| |||||| ||||||||||    
T  21193645 ttaacttcaccagaaaagtcattctcatgactttaccatagaattttcctt 21193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 42665541 - 42665591
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||| | || ||||||||||| ||||||||||    
T  42665541 ttaacttcaccaaaaaaatcattatcataacttcaccatagaattttcctt 42665591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 46994787 - 46994837
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||| ||| ||||||||| || ||||||||||    
T  46994787 ttaacttcaccaaaaaaatcattcttacgacttcaccgtagaattttcctt 46994837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 47481561 - 47481511
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| ||| ||||||  ||||||||||||||| ||||||||||    
T  47481561 ttaacttcaccaaaaacatcattcctatgacttcaccataaaattttcctt 47481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 54828837 - 54828883
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  54828837 ttaactttaccaaaaaaattatttttatgacttcaccataaaatttt 54828883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 55343421 - 55343471
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||| ||||||| |||||||  ||||||||||||| ||||||||||    
T  55343421 ttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcctt 55343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 3655339 - 3655388
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||| | || |||| |||||||||||||||||||||| |||||||||    
T  3655339 ttaactttatcaaaaaagtcatttttatgacttcaccataaaattttcct 3655388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 4015499 - 4015451
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||| ||||||| ||||| | |||||||||||||| ||||||||    
T  4015499 ttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcc 4015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 32180714 - 32180794
Alignment:
Q  14 aattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||| ||||  |||||||||   ||||||||||||| |||||| ||||| | || |||||||| || |||||||    
T  32180714 aattaaatacacaaatgctcaatgattaaccatttaacttcactagaaaagtcattctcataacttcaccgtacaattttc 32180794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 44880871 - 44880831
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttca 55  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  44880871 attaaatacataaatgttcaatgattgaccatttaacttca 44880831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 44891545 - 44891498
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||||| ||||||||||| |||||||||||    
T  44891545 ttaacttcacca-aaaagtcattttcatgacttcaccgtataattttcc 44891498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 51213118 - 51213166
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||| | |||||||||||||| ||||||||    
T  51213118 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 41713248 - 41713164
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| ||||||||    
T  41713248 atgaattaaatacataaatattcaatgattggtcatttaatttcaccagaaaaatcattttcatgatttcactatagaattttcc 41713164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 34441885 - 34441971
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||    
T  34441885 atgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcctt 34441971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 42005469 - 42005390
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||| | |||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  42005469 attaaataaacaaatattcaatggttgatcatttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 18947566 - 18947642
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatt 91  Q
    |||||||||| |||| |||||||||||  |||||||||||||||||||| | ||||| |||||||||||||| ||||    
T  18947566 attaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcaccatagaatt 18947642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 6177859 - 6177772
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttg 98  Q
    |||||||||||||| ||||  ||||||||||  |||||||||||||||||||| ||||| | |||||||| || || |||||||||||    
T  6177859 atgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccgtagaattttccttg 6177772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 41643956 - 41643874
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    |||||||||||||| ||||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||||||||| ||||||    
T  41643956 atgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 19093462 - 19093411
Alignment:
Q  46 tttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  19093462 tttaacttcaccagaaaaatcattctcatgacttcaccataaaattttcctt 19093411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 39788545 - 39788626
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||| ||||  ||||||||||   |||| ||||||| |||||| ||||| |||||||||||||||| |||||||||    
T  39788545 attaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaattttcct 39788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 29242292 - 29242343
Alignment:
Q  46 tttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||| ||||| |||||| |||||||||||||| ||||||||||    
T  29242292 tttaacttcaccaaaaaaaccattttcatgacttcaccatagaattttcctt 29242343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 4166970 - 4166920
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||||||||||    
T  4166970 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcctt 4166920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 18494423 - 18494473
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||||| |||||||||||| | ||||||||||    
T  18494423 ttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcctt 18494473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 18779365 - 18779435
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttca 81  Q
    |||||||||||||| ||||  ||||||||||  |||||||||||| ||  ||| |||||||||||||||||    
T  18779365 atgaattaaatacacaaatgctcaatgattgaccatttaacttcatcaataaagtcatttttatgacttca 18779435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 19073438 - 19073356
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcacc-agaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||| ||||  ||||||||||  |||||||||||||| | |||||||||| | || ||||||||||| |||||||||    
T  19073438 attaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcct 19073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 19313900 - 19313852
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||    
T  19313900 ttaacttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 22963448 - 22963400
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  22963448 ttaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22963400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 22998029 - 22998077
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  22998029 ttaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22998077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 26357625 - 26357577
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||| ||||||| ||||||| |||||||||||||| ||||||||    
T  26357625 ttaacttcatcagaaaagtcattttcatgacttcaccataaaattttcc 26357577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 27138992 - 27139056
Alignment:
Q  19 aatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcacc 83  Q
    |||||| ||||  ||||||||||| |||||||||||| || |||| ||||||| |||||||||||    
T  27138992 aatacacaaatgatcaatgattggccatttaacttcatcaaaaaagtcattttcatgacttcacc 27139056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37905756 - 37905709
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  37905756 ttaacttcacca-aaaaatcatttttataacttcaccatagaattttcc 37905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 41465557 - 41465509
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||    
T  41465557 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 5881580 - 5881533
Alignment:
Q  49 aacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||| ||||||| |||||||||| ||| |||||||||    
T  5881580 aacttcaccagaaaagtcattttaatgacttcacaataaaattttcct 5881533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 13711512 - 13711465
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||||    
T  13711512 ttaacttcaccagaaaagtcattctgatgacttcaccatagaattttc 13711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 35958955 - 35958909
Alignment:
Q  49 aacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||||||    
T  35958955 aacttcaccaaaaaagtcatttttatgacttcatcatagaattttcc 35958909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 41960931 - 41960881
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||| || |||| |||||| ||||||||||||||| ||||||||||    
T  41960931 ttaacttcatcaaaaaagtcatttctatgacttcaccatagaattttcctt 41960881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 4264232 - 4264281
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||| ||||||||| ||||| | |||||||||||||| |||||||||    
T  4264232 ttaactttaccagaaaagtcattatgatgacttcaccatagaattttcct 4264281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 18059326 - 18059379
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaa 64  Q
    |||||||||||||| ||||||||||| ||||  |||||||| |||||| |||||    
T  18059326 atgaattaaatacacaaatattcaataattgaccatttaacatcaccaaaaaaa 18059379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 19424783 - 19424832
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||||||||  |||| | |||||||||||||| |||||||||    
T  19424783 ttaacttcaccagaaaagccattctcatgacttcaccataaaattttcct 19424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 4108879 - 4108962
Alignment:
Q  14 aattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||    
T  4108879 aattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcctt 4108962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 23176731 - 23176802
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccata 86  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  23176731 attaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcaccata 23176802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 28220934 - 28221003
Alignment:
Q  26 aaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||| ||||||||    
T  28220934 aaatattcaatgattggtcatttaacttcaccagaaaagtcattttcatgactttatcatagaattttcc 28221003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 8151380 - 8151451
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccata 86  Q
    ||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||    
T  8151380 attaaatgcacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgactgcaccata 8151451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 38110401 - 38110352
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  38110401 ttaacttcatcagaaaaatcattttcatgacttcaccataaaattttcct 38110352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13307670 - 13307622
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  13307670 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 34895014 - 34894964
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  34895014 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctt 34894964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 1150248 - 1150297
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||| ||||| |||||||||||||||| |||||||||    
T  1150248 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 1150297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 30654726 - 30654775
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||| | |||||||||||||||| |||||||||    
T  30654726 ttaacttcaccaaaaaaatcactcttatgacttcaccataaaattttcct 30654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 15009289 - 15009241
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||| |||||||||||||||| ||||||||    
T  15009289 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 1204974 - 1204919
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttat 102  Q
    ||||||||||||||||| ||||| | ||||||||||| || |||||||||| ||||    
T  1204974 ttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcctttttat 1204919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 465889 - 465843
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||    
T  465889 ttaacttcaccacaaaagtcattttaatgacttcaccataaaatttt 465843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 36695109 - 36695159
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||| ||||||| |||||||  ||||||||||||| ||||||||||    
T  36695109 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctt 36695159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 7290803 - 7290719
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||  || ||||  |||||||||   |||||||| ||||||||||| ||||||  |||||||||||||| |||||||||    
T  7290803 atgaattaaacgcacaaatgatcaatgattcaccatttaacgtcaccagaaaa-tcatttgcatgacttcaccatagaattttcct 7290719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 16447018 - 16447067
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||| | ||||||| ||||||| |||||||||||||| |||||||||    
T  16447018 ttaactttatcagaaaagtcattttcatgacttcaccatagaattttcct 16447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 27082981 - 27083030
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||| ||| | | |||||||||||||| |||||||||    
T  27082981 ttaacttcaccagaaaagtcagtctgatgacttcaccatagaattttcct 27083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 41191019 - 41191071
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgtt 100  Q
    |||||||||||| |||| ||||||| || ||||||||||| |||||||||||||    
T  41191019 ttaacttcaccaaaaaagtcattttcataacttcaccata-aattttccttgtt 41191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6098661 - 6098709
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| | ||||| |||||||||||||| ||||||||    
T  6098661 ttaacttcaccaaaaaagttattttcatgacttcaccatagaattttcc 6098709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 41362565 - 41362517
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||||| || ||||||||||| ||||||||    
T  41362565 ttaacttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 22616573 - 22616492
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||| |  ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  22616573 attaaatacataa-tgctcaatgattggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 22616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 26411377 - 26411293
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatt----taacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||||||||||||||||||||    | ||||||||| |||||||||| | |||||||||||||| ||||||||    
T  26411377 attaaatacataaatattcaatgattggtcattctaatgacttcaccaaaaaaatcattctaatgacttcaccatagaattttcc 26411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 41417546 - 41417635
Alignment:
Q  14 aattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttata 103  Q
    ||||||||||| |||| ||||||||||   ||||||||||||| |||||||||||| ||| || |||||||||||||||| | |||||||    
T  41417546 aattaaatacacaaatgttcaatgattaaccatttaacttcactagaaaaatcattcttacgatttcaccatataatttttcatgttata 41417635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 10237498 - 10237415
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||||| ||||  ||||||||||  ||||||||||||| |||||| ||||||| |||||||||| ||| |||||||    
T  10237498 atgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 31705738 - 31705785
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  31705738 ttaacttcaccaaaaaaatcatttttatgacttcaccatagaattttc 31705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 21320814 - 21320752
Alignment:
Q  32 tcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||| ||||||||||||| || |||| |||||||||| ||||||||||| |||||||    
T  21320814 tcaatgattgatcatttaacttcatcaaaaaagtcatttttattacttcaccatagaattttc 21320752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 36860471 - 36860421
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  36860471 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcctt 36860421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 36055838 - 36055923
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||| || ||||  ||||||||||  ||||||||||||| |||||| ||||| | ||||| |||||||| |||||||||    
T  36055838 atgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcct 36055923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 5112440 - 5112492
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgt 99  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||||    
T  5112440 ttaacttcaccaaaaaagtcattttcatgacttcaccataaaattttccttgt 5112492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 7693278 - 7693230
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  7693278 ttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 36866810 - 36866762
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  36866810 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 36866762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 12910399 - 12910348
Alignment:
Q  46 tttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  12910399 tttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcctt 12910348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 25513816 - 25513769
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||||    
T  25513816 acttcaccagaaaaatcattttaacgacttcaccatagaattttcctt 25513769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 32563197 - 32563150
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  32563197 ttaacttcatcagaaaaatcattttaatgacttcaccatagaattttc 32563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 38528363 - 38528414
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttg 98  Q
    ||||||||| |||||||| |||||| |||||||||||||| |||||||||||    
T  38528363 ttaacttcatcagaaaaaccattttcatgacttcaccatagaattttccttg 38528414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 8742014 - 8742064
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  8742014 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 8742064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 33163593 - 33163515
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    |||||| ||| |||| || ||||||| | ||||||||| ||||  |||||||||||| |||||||||||||| ||||||    
T  33163593 attaaacacacaaatgtttaatgattagacatttaactccaccgaaaaaatcattttcatgacttcaccatagaatttt 33163515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 35504214 - 35504168
Alignment:
Q  48 taacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||    
T  35504214 taacttcaccaaaaaaatcatttttatgacttcaacatagaattttc 35504168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 9200281 - 9200232
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||| | ||||| |||||||||||||| |||||||||    
T  9200281 ttaacttcaccagaaaagttattttaatgacttcaccataaaattttcct 9200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 14409456 - 14409501
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||    
T  14409456 acttcaccagaaaaatcattctcatgacttcaccatagaattttcc 14409501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 5829945 - 5829897
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||||||| ||||||||| || ||||||||    
T  5829945 ttaacttcaccaaaaaaatcatttttacgacttcaccctagaattttcc 5829897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 17158173 - 17158209
Alignment:
Q  60 aaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17158173 aaaaatcatttttatgacttcaccatagaattttcct 17158209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 13887282 - 13887235
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||||||||||| | |||||||||||| ||||| ||||    
T  13887282 acttcaccagaaaaatcattttaacgacttcaccataaaatttccctt 13887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 19119907 - 19119857
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| ||||| | |||||||||||||| ||||||||||    
T  19119907 ttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctt 19119857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 22974209 - 22974259
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||| | || ||||||||||| ||||||||||    
T  22974209 ttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcctt 22974259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 35826610 - 35826663
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgtt 100  Q
    |||||||||| | |||| ||||| | |||||||||||||| |||||||||||||    
T  35826610 ttaacttcacaaaaaaagtcattatcatgacttcaccatagaattttccttgtt 35826663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 35933950 - 35933901
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| || |||||||||| | |||||||||||||| |||||||||    
T  35933950 ttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcct 35933901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 26317811 - 26317859
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||||| ||||||||| |||| ||||||||    
T  26317811 ttaacttcaccaaaaaagtcattttcatgacttcatcatagaattttcc 26317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 27318614 - 27318650
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcacc 83  Q
    ||||||||||||||||||||||| | |||||||||||    
T  27318614 ttaacttcaccagaaaaatcattctcatgacttcacc 27318650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 40133433 - 40133385
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| |||||||  ||||||||||||| ||||||||    
T  40133433 ttaacttcaccacaaaagtcattttcgtgacttcaccatagaattttcc 40133385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 13876887 - 13876968
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||| ||||| |||||||||| |||||||||||||||| |||| ||||||| || ||||||||||| |||||||||    
T  13876887 attaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 18422695 - 18422646
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  18422695 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcct 18422646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 19899901 - 19899950
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  19899901 ttaacttcaccaaaaaaatcattattatgacttcaccatagaattttcct 19899950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 16127600 - 16127536
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgactt 79  Q
    |||||||||| ||||  ||||||||||  |||||||||||||||||||| ||||||| |||||||    
T  16127600 attaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaagtcattttcatgactt 16127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 23999391 - 23999343
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  23999391 ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcc 23999343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 42721082 - 42721035
Alignment:
Q  48 taacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  42721082 taacttcaccaaaaaaatcattttcatgacttcaccatagaattttcc 42721035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 1547331 - 1547281
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  1547331 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 1547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 10182139 - 10182189
Alignment:
Q  46 tttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||| |||| ||||||| |||||||||||||| |||||||||    
T  10182139 tttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2959792 - 2959743
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| ||||||| ||||||| |||||||||||||| |||||||||    
T  2959792 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcct 2959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 27227609 - 27227657
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||||||    
T  27227609 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 27227657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 4150490 - 4150537
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  4150490 acttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 4150537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 16415689 - 16415638
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttg 98  Q
    ||||||||||||||||| ||||| | ||||||||||| || |||||||||||    
T  16415689 ttaacttcaccagaaaagtcattctcatgacttcaccttagaattttccttg 16415638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 15382977 - 15382927
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||| ||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  15382977 ttaatttcaccaaaaaagtcatttttataacttcaccatagaattttcctt 15382927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 17695977 - 17696007
Alignment:
Q  11 atgaattaaatacataaatattcaatgattg 41  Q
    |||||||||||||||||||||||||||||||    
T  17695977 atgaattaaatacataaatattcaatgattg 17696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 32267078 - 32267028
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||| | |||| ||||| |||||||||||||||| ||||||||||    
T  32267078 ttaacttcacaaaaaaagtcattcttatgacttcaccataaaattttcctt 32267028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 37619028 - 37619078
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| ||||| |||| ||||||||||| ||||||||||    
T  37619028 ttaacttcaccaaaaaagtcattcttataacttcaccatagaattttcctt 37619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 43579292 - 43579242
Alignment:
Q  45 atttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||| ||||| | |||||||||||||| ||||||||    
T  43579292 atttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 43579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 16132555 - 16132474
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||| ||||  ||||| ||| | ||||||||||||||| |||| ||| | |  ||||||||||||| |||||||||    
T  16132555 attaaatacacaaatgctcaataatttgccatttaacttcaccaaaaaagtcaatctattgacttcaccatagaattttcct 16132474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 30254902 - 30254853
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  30254902 ttaacttcatcaaaaaagtcattattatgacttcaccatagaattttcct 30254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 27267329 - 27267376
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||||||    
T  27267329 ttaacttcaccaaaaaaatcattctcatgacttca-catataattttcc 27267376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 38823258 - 38823210
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||| ||||||||| ||||| | |||||||||||||| ||||||||    
T  38823258 ttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcc 38823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 4618719 - 4618810
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttccttgttat 102  Q
    |||||||||||||| |||| |||||||||| |||||||||||| |||| |||||||||||| ||||||| ||| || |||||| ||| ||||    
T  4618719 atgaattaaatacacaaatgttcaatgattagtcatttaactttaccaaaaaaatcattttcatgactttaccgtagaatttttctttttat 4618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 4902420 - 4902340
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||||  ||||| |||| |||||||| ||||||| |||||| ||||| |||||||||||||| ||||||||    
T  4902420 attaaatacataaatgctcaataattgatcatttaaattcaccaaaaaaattattttcatgacttcaccataaaattttcc 4902340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 23402335 - 23402419
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||||| | || |||||||||||  |||||||||||||||||||| ||||| | |||||||| ||||| ||||||||    
T  23402335 atgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 5781598 - 5781536
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgac 77  Q
    |||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||| |||||    
T  5781598 attaaatacacaaatatttaatgattgatcatttaactttaccagaaaaatcattttcatgac 5781536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 7742999 - 7742924
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataat 90  Q
    |||||||||| ||||| |||||||||| |||||| |||||| || |||| ||||||||||||||||| ||| ||||    
T  7742999 attaaatacacaaatactcaatgattgatcattttacttcatcaaaaaagtcatttttatgacttcagcatgtaat 7742924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 17842724 - 17842774
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||||||    
T  17842724 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcctt 17842774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 32821191 - 32821241
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  32821191 ttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttcctt 32821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 40382016 - 40381938
Alignment:
Q  19 aatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| | |||||||  ||||||||||||||||||||| ||||| | || |||||||| || ||||||||||    
T  40382016 aatacataaatacttaatgattaatcatttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcctt 40381938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 32432480 - 32432431
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  32432480 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcct 32432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 6546542 - 6546494
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  6546542 ttaacttcactagaaaaatcattcttatgacttcaccatagaattttcc 6546494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27283767 - 27283719
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  27283767 ttaacttcaccaaaaaaatcatttttataacttcaccatagaattttcc 27283719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37109895 - 37109847
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  37109895 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcc 37109847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37347045 - 37346997
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  37347045 ttaacttcaccaaaaaaatcattttcatgacttcaccataaaattttcc 37346997  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 22955280 - 22955351
Alignment:
Q  15 attaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccata 86  Q
    |||||||||| |||| |||||| ||||  |||||||||||||||||||| ||||| | || |||||||||||    
T  22955280 attaaatacacaaatgttcaataattgaccatttaacttcaccagaaaagtcattctcattacttcaccata 22955351  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 38258568 - 38258521
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||    
T  38258568 ttaacttcaccaaaaaaatcatttttatgacttcaccgtagaattttc 38258521  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 23111213 - 23111167
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||    
T  23111213 ttaacttcaccagaaaaatcattttcatgacttcaccacagaatttt 23111167  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 31579207 - 31579256
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||| ||| |||||||||||||||| |||||||||    
T  31579207 ttaacttcaccaaaaaaattattcttatgacttcaccatagaattttcct 31579256  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 4582942 - 4582894
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||||||||    
T  4582942 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcc 4582894  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 24211764 - 24211717
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||| |||| ||||| |||||||||||||||| |||||||    
T  24211764 ttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttc 24211717  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 241024 - 241070
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||| |||| ||||||| |||||||||||||| |||||||||    
T  241024 acttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 241070  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 8299238 - 8299192
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataatttt 93  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  8299238 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaatttt 8299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 18797352 - 18797302
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||| ||||| | |||||||||||||| ||||||||||    
T  18797352 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 18797302  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 26524465 - 26524515
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    ||||| ||||||||||| ||||| | |||||||||||||| ||||||||||    
T  26524465 ttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcctt 26524515  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 21991659 - 21991610
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||| |||||||||| | ||||||||||| || |||||||||    
T  21991659 ttaacttcaccataaaaatcattctcatgacttcaccctagaattttcct 21991610  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 5657619 - 5657667
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||| |||||| ||||| | |||||||||||||| ||||||||    
T  5657619 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 12165775 - 12165727
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    ||||||||||||||||| ||||||| | ||||||||| || ||||||||    
T  12165775 ttaacttcaccagaaaagtcattttaacgacttcaccgtagaattttcc 12165727  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 31520861 - 31520909
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcc 95  Q
    |||||||||||| |||| ||||||| ||||||||| |||| ||||||||    
T  31520861 ttaacttcaccaaaaaagtcattttcatgacttcatcataaaattttcc 31520909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 48928704 - 48928748
Alignment:
Q  50 acttcaccagaaaaatcatttttatgacttcaccatataattttc 94  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||    
T  48928704 acttcaccagaaaagtcattctcatgacttcaccataaaattttc 48928748  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 408706 - 408756
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  408706 ttaacttcaccaaaaaaatcatttttatgacttcaccatagaattttcctt 408756  T

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Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 182 - 133
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||| |||||||  ||||||||||||| |||||||||    
T  182 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 24781 - 24866
Alignment:
Q  11 atgaattaaatacataaatattcaatgattggtcatttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    |||||||||||||| ||||  ||||||||||  ||||||| |||||||||||||||||| | || ||||  ||||| |||||||||    
T  24781 atgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaaatcattctcataactttgccatagaattttcct 24866  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 100869 - 100819
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcctt 97  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||||||||    
T  100869 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcctt 100819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 42396 - 42347
Alignment:
Q  47 ttaacttcaccagaaaaatcatttttatgacttcaccatataattttcct 96  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||||||||    
T  42396 ttaacttcaccagaaaaattattctcatgacttcaccataaaattttcct 42347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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