View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_11 (Length: 266)
Name: NF18307_low_11
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 52528726 - 52528555
Alignment:
| Q |
13 |
tgaagcggcatgtgaaggatttgcatgaggaagatgtttcgttgaagcggcgagaagctgcgaccaccgtgagaatgctcgctaaggagaatttagggct |
112 |
Q |
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| T |
52528726 |
tgaagcggcatgagaaggatttgcatgaggaagatgattcggtgaagcggcgagaagcggcgaccaccgtgagaatgctcgctaaggagaattttgggct |
52528627 |
T |
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| Q |
113 |
caaggtactttttgtttacgaagatgtggatgtgtagggtcacatgattggatgaatcagaatcagaaacac |
184 |
Q |
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| T |
52528626 |
taaggtactttttgtttacgaagatgtggatgtggagggtcacgtgattggatgaatcataatcagaaacac |
52528555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 13863440 - 13863259
Alignment:
| Q |
13 |
tgaagcggcatgtgaaggatttgcatgaggaagatgtttcgttgaagcggcgagaagctgcga----------ccaccgtgagaatgctcgctaaggaga |
102 |
Q |
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| T |
13863440 |
tgaagcggcatgtgaaggatttgcatgaggaagatgattcggtgaagcggcgagaagctgcgagaaactgcgaccaccgtgagaatgcttgctaaggaga |
13863341 |
T |
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| Q |
103 |
atttagggctcaaggtactttttgtttacgaagatgtggatgtgtagggtcacatgattggatgaatcagaatcagaaacac |
184 |
Q |
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| T |
13863340 |
attttgggcttaaggtactttttgtttacgaagatgtggatgtggagggtcacgtgattggatgaatcataatcagaaacac |
13863259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 37978903 - 37979007
Alignment:
| Q |
13 |
tgaagcggcatgtgaaggatttgcatgaggaagatgtttcgttgaagcggcgagaagctgcgaccaccgtgagaatgctcgctaaggagaatttagggct |
112 |
Q |
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| T |
37978903 |
tgaagcggcatgtgaaggatttgcatgaggaagatgtttcgttgaagcggcgagaagctgcgaccaccatgagaatgctcgctaaggagaattttgggct |
37979002 |
T |
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| Q |
113 |
caagg |
117 |
Q |
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| T |
37979003 |
caagg |
37979007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 2983719 - 2983802
Alignment:
| Q |
23 |
tgtgaaggatttgcatgaggaagatgtttcgttgaagcggcgagaagctgcgaccaccgtgagaatgctcgctaaggagaattt |
106 |
Q |
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| T |
2983719 |
tgtgaaggatttgcatgaggaagatgattcggtgaagcggcgtgaagctgcgaccaccgtgagaatgctcgctaaggagaattt |
2983802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 50830810 - 50830763
Alignment:
| Q |
129 |
tacgaagatgtggatgtgtagggtcacatgattggatgaatcagaatc |
176 |
Q |
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| T |
50830810 |
tacgaagatgtggatgttgaaggtcacatgattggacgaatcagaatc |
50830763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 50845043 - 50845090
Alignment:
| Q |
129 |
tacgaagatgtggatgtgtagggtcacatgattggatgaatcagaatc |
176 |
Q |
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| T |
50845043 |
tacgaagatgtggatgttgaaggtcacatgattggacgaatcagaatc |
50845090 |
T |
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