View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_13 (Length: 250)
Name: NF18307_low_13
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 43881765 - 43881997
Alignment:
| Q |
2 |
ataaaactgagtatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881765 |
ataaaactgagtatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
43881864 |
T |
|
| Q |
102 |
caaggagtctcggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881865 |
caaggagtctcggcttaaatcactgaacaagtccgtcagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
43881964 |
T |
|
| Q |
202 |
gatatcaaacaacaaatggatgaccataaaact |
234 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43881965 |
gatatcaaacaacaaatggatgaccataaaact |
43881997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 43881990 - 43882222
Alignment:
| Q |
2 |
ataaaactgagtatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
101 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881990 |
ataaaactgagtatttccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
43882089 |
T |
|
| Q |
102 |
caaggagtctcggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882090 |
caaggagtctcggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
43882189 |
T |
|
| Q |
202 |
gatatcaaacaacaaatggatgaccataaaact |
234 |
Q |
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|
||||||||||||| ||||||||||||||||||| |
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| T |
43882190 |
gatatcaaacaacgaatggatgaccataaaact |
43882222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 43882215 - 43882447
Alignment:
| Q |
2 |
ataaaactgagtatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882215 |
ataaaactgagtttctccgttcgcctgaaaaagctaggcaagtaactcgaggagtctcggctacagattttcaacaaaaatcaagtgatttttctgacaa |
43882314 |
T |
|
| Q |
102 |
caaggagtctcggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
201 |
Q |
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|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882315 |
caaggagtctcggcttaaatcattgaacaagtccgtcagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggt |
43882414 |
T |
|
| Q |
202 |
gatatcaaacaacaaatggatgaccataaaact |
234 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |
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| T |
43882415 |
gataccaaacaacgaatggatgaccataaaact |
43882447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 43881651 - 43881772
Alignment:
| Q |
113 |
ggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaaca |
212 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881651 |
ggcttaaatcactgaacgcatccattggtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaaca |
43881750 |
T |
|
| Q |
213 |
acaaatggatgaccataaaact |
234 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
43881751 |
acaaatggatgaccataaaact |
43881772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 43882440 - 43882542
Alignment:
| Q |
2 |
ataaaactgagtatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaa |
101 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
43882440 |
ataaaactgagtttctccattcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaa |
43882539 |
T |
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| Q |
102 |
caa |
104 |
Q |
| |
|
||| |
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|
| T |
43882540 |
caa |
43882542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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