View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_18 (Length: 230)
Name: NF18307_low_18
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 56231304 - 56231107
Alignment:
| Q |
17 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
116 |
Q |
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| T |
56231304 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
56231205 |
T |
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| Q |
117 |
aggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatc |
214 |
Q |
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| T |
56231204 |
aggccatcatcaaagtaatcagaagcatcaccaccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatc |
56231107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 39189030 - 39188833
Alignment:
| Q |
17 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
116 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||| |
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| T |
39189030 |
aggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaattgaa |
39188931 |
T |
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| Q |
117 |
aggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatc |
214 |
Q |
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|| ||||||||||||||||| |||| || ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
39188930 |
agagcatcatcaaagtaatcaacagcaggacttccaagagatatggaaagaacatcaaccccatcatgaatagccatatcaaaggctgccatgatatc |
39188833 |
T |
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