View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_19 (Length: 220)
Name: NF18307_low_19
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_19 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 37163090 - 37162888
Alignment:
| Q |
18 |
gggatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggt |
117 |
Q |
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| T |
37163090 |
gggatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagctgctcaagtcaagatgggt |
37162991 |
T |
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| Q |
118 |
taaaagagtgagattagaaagccactcacctccaacatcattattcttgtcatgaactttgagtcctcgattgtctccaagatgaagctgctgcaaattc |
217 |
Q |
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| T |
37162990 |
taaaagagtgagattagaaagccactcacctccaacatcattattcttgtcatgaactttgagtcctcgattgtctccaagatgaagctgctgcaaattc |
37162891 |
T |
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| Q |
218 |
gaa |
220 |
Q |
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||| |
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| T |
37162890 |
gaa |
37162888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 37130423 - 37130259
Alignment:
| Q |
20 |
gatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggtta |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| | ||| | ||||||||| |||||||||| || ||| ||||||||||||||||||| |
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| T |
37130423 |
gatagcttcaattcttgtatttttggaagcttaccaatcatttgcatccacatatgagaagatttgagattgggtacgccactcaagtcaagatgggtta |
37130324 |
T |
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| Q |
120 |
aaagagtgagattagaaagccactcacctccaacatcattattcttgtcatgaactttgagtcct |
184 |
Q |
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| T |
37130323 |
aaagagtgagattagaaagccactcacctccagcatgattattctggtcttgaactttgagtcct |
37130259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 37144706 - 37144510
Alignment:
| Q |
20 |
gatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggtta |
119 |
Q |
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| T |
37144706 |
gatagcttcaattcttctaattttttaagattaccagtcatttgcagccagacatgagaagaatcgagattttgtacccaactcaagtcaagatgggtca |
37144607 |
T |
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| Q |
120 |
aaagagtgagattagaaagccactcacctccaacatcattattcttgtcatgaactttgagtcctcgattgtctccaagatgaagctgctgcaaatt |
216 |
Q |
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| T |
37144606 |
aaagagtgagattagaaagccactcacctccagcatggttattgttgtcatgaactttcagtccttgattggatccaagatgaagctcctgtaaatt |
37144510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 37137582 - 37137418
Alignment:
| Q |
20 |
gatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggtta |
119 |
Q |
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| T |
37137582 |
gatagcttcaattcttctatttttggaagcttagcaatcatttgcagccaaacaagagtagaatcaagatttcgtaccccactcaagtcaaggtgagtta |
37137483 |
T |
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| Q |
120 |
aaagagtgagattagaaagccactcacctccaacatcattattcttgtcatgaactttgagtcct |
184 |
Q |
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| T |
37137482 |
agagagtgagattagaaagccactcacctccaacatgattattctcgtcatgaactttgagtcct |
37137418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 38746096 - 38745964
Alignment:
| Q |
20 |
gatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggtta |
119 |
Q |
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| T |
38746096 |
gatagcttcaattcttgtatttttggaagctttccaatcatttgcagccagacatgagaagaattgagatttggtaagtaactcaagtcgagatgcgtta |
38745997 |
T |
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| Q |
120 |
aaagagtgagattagaaagccactcacctccaa |
152 |
Q |
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| T |
38745996 |
aaagagtgagattagaaagccattcacctccaa |
38745964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 35144060 - 35144185
Alignment:
| Q |
25 |
cttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggttaaaaga |
124 |
Q |
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| T |
35144060 |
cttcaattcttctatttttgggagcataccaatcatttgtaaccaaccatgagagtaattgagattaagtacccaactaaggtcaagatgcgttaaaaga |
35144159 |
T |
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| Q |
125 |
gtgagattagaaagccactcacctcc |
150 |
Q |
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|||||||| || | |||||||||||| |
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| T |
35144160 |
gtgagattggacaaccactcacctcc |
35144185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 3024701 - 3024831
Alignment:
| Q |
20 |
gatagcttcaattcttctatttttggaagcttaccaatcatttggagccagacatgagaagaattgagattggttaagccgctcaagtcaagatgggtta |
119 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||| |||| |
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| T |
3024701 |
gatagcttcaattcttgtatttttggaagctttccaatcatttgcagccagacatgagaagaattgagatttggcaagcgactcaagtcaagatgcgtta |
3024800 |
T |
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| Q |
120 |
aaagagtgagattagaaagccactcacctcc |
150 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3024801 |
aaagagtgagattagaaagccactcacctcc |
3024831 |
T |
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