View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_20 (Length: 218)
Name: NF18307_low_20
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 45106656 - 45106862
Alignment:
| Q |
12 |
tactatagggtcacatagatcaattacttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaa |
111 |
Q |
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| T |
45106656 |
tactatagggtcacatagatcaattacttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaa |
45106755 |
T |
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| Q |
112 |
ctgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaattgaaaccatgattatga |
211 |
Q |
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| T |
45106756 |
ctgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaattgaaaccatgattatga |
45106855 |
T |
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| Q |
212 |
atataac |
218 |
Q |
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||||||| |
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| T |
45106856 |
atataac |
45106862 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 5623559 - 5623484
Alignment:
| Q |
89 |
tcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
5623559 |
tcagttctgcgtcgggttttaaactcatgatgttccttttttggtagccggcatattttcttgatggatcatacaa |
5623484 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 18602485 - 18602405
Alignment:
| Q |
84 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
18602485 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18602405 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 18630141 - 18630221
Alignment:
| Q |
84 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
18630141 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18630221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 18642849 - 18642929
Alignment:
| Q |
84 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
18642849 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18642929 |
T |
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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 18525066 - 18524986
Alignment:
| Q |
84 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
18525066 |
tatcttaagttctgagcttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18524986 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 35298141 - 35298214
Alignment:
| Q |
91 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
35298141 |
agttctgcgtcgggttttaaactcacgatgttccgtttctggtagccggcatattttcttgatggatcatacaa |
35298214 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 38575669 - 38575596
Alignment:
| Q |
91 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
164 |
Q |
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| T |
38575669 |
agttctgagtttggtttcaagctcaagatgtttcgcttttgataacctgcatatttccttgaagggtcatacaa |
38575596 |
T |
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