View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_21 (Length: 207)
Name: NF18307_low_21
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 1145177 - 1145356
Alignment:
| Q |
17 |
aaaaacatgatacttaattaatggaagtgaaagaatgtgattaaagccaaaagctcatgcataagaagaatgttgagacaccaaaatgagtccttgcaga |
116 |
Q |
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| T |
1145177 |
aaaaacatgatacttaattaatggaagtgaaataatgtgattaaagccaaaagctcatgcataagaaaaatgttgagacaccaaaatgagtccttgcaga |
1145276 |
T |
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| Q |
117 |
aactgttgttgcagaagcagagttagcagtgtgatt---gtggtgataataatgagtgtttccacttgaccttcctttgc |
193 |
Q |
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| T |
1145277 |
aactgttgttgcagaagcagagttagcagtgtgattgtggtggtgataataatgagtgtttccacttgaccttcctttgc |
1145356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 1137000 - 1137077
Alignment:
| Q |
20 |
aacatgatacttaattaatggaagtgaaagaatgtgattaaagccaaaagctcatgcataagaagaatgttgagacac |
97 |
Q |
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| T |
1137000 |
aacatgatactaaactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacac |
1137077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 1148459 - 1148533
Alignment:
| Q |
58 |
taaagccaaaagctcatgcataagaagaatgttgagacaccaaaatgagtccttgcagaaactgttgttgcagaa |
132 |
Q |
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| T |
1148459 |
taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaa |
1148533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 1133439 - 1133551
Alignment:
| Q |
20 |
aacatgatacttaattaatggaagtgaaagaatgtgattaaagccaaaagctcatgcataagaagaatgttgagacaccaaaatgagtccttgcagaaac |
119 |
Q |
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| T |
1133439 |
aacatgatacttaactactggaagtgaaacaaggtaattaaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaa |
1133538 |
T |
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| Q |
120 |
tgttgttgcagaa |
132 |
Q |
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| T |
1133539 |
tgatgctgcagaa |
1133551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 1181254 - 1181336
Alignment:
| Q |
50 |
aatgtgattaaagccaaaagctcatgcataagaagaatgttgagacaccaaaatgagtccttgcagaaactgttgttgcagaa |
132 |
Q |
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|||||| ||||||||||||||||| || || | || |||||||||| |||||||| || |||||| | ||||||||||||| |
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| T |
1181254 |
aatgtgtttaaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaa |
1181336 |
T |
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