View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_3 (Length: 431)
Name: NF18307_low_3
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 40126278 - 40125884
Alignment:
| Q |
20 |
atggggctactatcgaaggtgacacgagtatttcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcat |
119 |
Q |
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| T |
40126278 |
atggggctactatcgaaggtgacacaagtaattcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcac |
40126179 |
T |
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| Q |
120 |
tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc |
219 |
Q |
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| T |
40126178 |
tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc |
40126079 |
T |
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| Q |
220 |
atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaagcatgattcggtctcacctcgagcgtctc |
319 |
Q |
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| T |
40126078 |
atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaggcatgattcggtctcacctcgagcgtctc |
40125979 |
T |
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| Q |
320 |
atcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttggagaaatgtttgaattgaaaatcttagt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
40125978 |
atcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttcgagaaatgtttgaattgcaaatcttagt |
40125884 |
T |
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