View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_5 (Length: 347)
Name: NF18307_low_5
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 32227369 - 32227686
Alignment:
| Q |
18 |
agaatctgtcacttgatgacttctattgaggtcatttctacatatgaagggcactaacatggttactaggaaggtgggttcctccattttggtactgaga |
117 |
Q |
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| T |
32227369 |
agaatctgtcacttgatgacttctattgaggtcatttctacatatgaagggcactaacatggttactaggaaggtgggttcctccattttggtactaaga |
32227468 |
T |
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| Q |
118 |
aagatgaaagtgtgnnnnnnngttctttttgtggttgtcatgacaatgggaggaattgtgtagaataaaagagtagtcagtggacatgtttttgtgttcc |
217 |
Q |
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| T |
32227469 |
aagatgaaagtgtgtttttttgttctttttgtggttgtcatgacaatgggaggaattgtgtagaataaaagagtagtcagtggacatgtttttgtgttcc |
32227568 |
T |
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| Q |
218 |
tctctcttgaactaaggttgggactgctctacgatgtattgtttataatttttggtggataacatctacataaattatcttgaatgtttcagtatagatc |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32227569 |
tctctcttgaac-aaggttgggactgctctacgatgtattgtttataatttttggtggataacatctacataaattatcttgaatgttccagtatagatc |
32227667 |
T |
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| Q |
318 |
gtttgatgttaaagttcat |
336 |
Q |
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||||||||||||||||||| |
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| T |
32227668 |
gtttgatgttaaagttcat |
32227686 |
T |
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