View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_7 (Length: 321)
Name: NF18307_low_7
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 49584070 - 49584371
Alignment:
| Q |
1 |
tgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagaactgagcaacatcat |
100 |
Q |
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| T |
49584070 |
tgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagtactgagcaacatcat |
49584169 |
T |
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| Q |
101 |
cttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaagaagtgaatcctc |
200 |
Q |
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| T |
49584170 |
cttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaagaagtgaatcctc |
49584269 |
T |
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| Q |
201 |
atcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaa |
300 |
Q |
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| T |
49584270 |
atcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttgagaaatggaggaa |
49584369 |
T |
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| Q |
301 |
gg |
302 |
Q |
| |
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|| |
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| T |
49584370 |
gg |
49584371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 11698339 - 11698415
Alignment:
| Q |
4 |
tgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaag |
80 |
Q |
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||||| || |||||||||||| | || || || | |||||||||||| ||||| || |||||||||||||| ||||| |
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| T |
11698339 |
tgtttgcaaaaaccatgatagtacttggtaaacatttcaggtggaagaaaagtagggacacatttgaaattctcaag |
11698415 |
T |
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