View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18307_low_8 (Length: 290)
Name: NF18307_low_8
Description: NF18307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18307_low_8 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 45 - 276
Target Start/End: Complemental strand, 825292 - 825061
Alignment:
| Q |
45 |
tatatgttatctatgaactgaaagtttacatgttgcagatgcctttatgcacggggacaactttctttctatttcaagtggttcccctttgctccagatt |
144 |
Q |
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| T |
825292 |
tatatgttatctatgaactgaaagtttacatgttgcagatgcctttgtgcacggggacaactttctttctatttcaaggggttcccctttgctccagatt |
825193 |
T |
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| Q |
145 |
gtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctcacattgtaggcctgaaacgttccaaatagtgcaagttctaaggt |
244 |
Q |
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| T |
825192 |
gtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctcacattgtaggcctgaaacgttccaaatagtgcaagttctaaggt |
825093 |
T |
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| Q |
245 |
atgatgacatgcattgcggaatagacccaact |
276 |
Q |
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| T |
825092 |
atgatgacatgcattgcggaatagacccaact |
825061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 989427 - 989550
Alignment:
| Q |
64 |
gaaagtttacatgttgcagatgcctttatgcacggggacaactttctttctatttcaagtggttcccctttgctccagattgtcatggtttgtaattttt |
163 |
Q |
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| T |
989427 |
gaaagttgacatgatgcagaggccttcgggcatggggacaacttcgtttctatttcaggtggttctcttttgctccaaattgtcatggtttgtaaatatt |
989526 |
T |
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| Q |
164 |
tggcatttttcaaaatatattttg |
187 |
Q |
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| T |
989527 |
ttgcattttttaaaatatattttg |
989550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 1006351 - 1006220
Alignment:
| Q |
106 |
tttctttctatttcaagtggttcccctttgctccagattgtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctcacatt |
205 |
Q |
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| T |
1006351 |
tttctctctatttcagattgttccctttcactccaaattgtcatgatttctaaatttttaccattcttcaaaatatatttttctaacataagctcacttt |
1006252 |
T |
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| Q |
206 |
gtaggcctgaaacgttccaaatagtgcaagtt |
237 |
Q |
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| T |
1006251 |
gtaggcttaaaaagtaccgaatagtgcaagtt |
1006220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 1011754 - 1011878
Alignment:
| Q |
60 |
aactgaaagtttacatgttgcagatgcctttatgcacggggacaactttctttctatttcaagtggttcccctttgctccagattgtcatggtttgtaat |
159 |
Q |
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| T |
1011754 |
aactgaaagttgacatgttgcagaggccttcaggcattgggacaactttatttctattttcagcggctcacattcgcactcgattgtcatagtttgtaaa |
1011853 |
T |
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| Q |
160 |
tttttggcatttttcaaaatatatt |
184 |
Q |
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| T |
1011854 |
ttttgtgcatttctcaaaatatatt |
1011878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 830494 - 830459
Alignment:
| Q |
14 |
gaaggataaagaagcgactgcctacattgtctatat |
49 |
Q |
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| T |
830494 |
gaaggataaagaagcgactgcctacattgtctatat |
830459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 989588 - 989628
Alignment:
| Q |
225 |
aatagtgcaagttctaaggtatgatgacatgcattgcggaa |
265 |
Q |
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| T |
989588 |
aatagtgcaagttctaaggtatgatgaaaggcattgtggaa |
989628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 5675 - 5823
Alignment:
| Q |
101 |
acaactttctttctatttcaagtggttcccctttgctccagattgtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctc |
200 |
Q |
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|||| ||||||||||||||| | || |||||||||| || || ||||||||| ||| || | | ||| |||||||||||||||| |||| |||||| |
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| T |
5675 |
acaattttctttctatttcagattgtccccctttgcttcaaatgttcatggtttctaaaattcttgaattcttcaaaatatattttgctaactgaagctc |
5774 |
T |
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| Q |
201 |
acattgtaggcctgaaacgttccaaatagtgcaagttctaaggtatgat |
249 |
Q |
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| T |
5775 |
acattgtaggcctgagaagtccccaaaagtgcaagttctaagggatgat |
5823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 22076793 - 22076581
Alignment:
| Q |
37 |
acattgtctatatgttatctatgaactgaaagtttacatgttgcagatgcctttatgcacggggacaactttctttctatttcaagtggttcccctttgc |
136 |
Q |
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|||||||||||||| ||||||| |||| |||||| ||| |||||||| ||||||| |||| | |||| ||||||||||||||| | |||||| ||||| |
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| T |
22076793 |
acattgtctatatgctatctataaactaaaagttcacacgttgcagaagcctttaggcacagaaacaattttctttctatttcagctcgttcccttttgc |
22076694 |
T |
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| Q |
137 |
tccagattgtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctcacattgtaggcctgaaacgttccaaatagtgcaagt |
236 |
Q |
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| T |
22076693 |
tccaaatgaccatgatttccaaagttcttgaattcttcaaaatatattttgctaacccaagctcaattggtaagcctgagaagtctccaatagtgcaagt |
22076594 |
T |
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| Q |
237 |
tctaaggtatgat |
249 |
Q |
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| T |
22076593 |
tctaaggcatgat |
22076581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 32247225 - 32247115
Alignment:
| Q |
141 |
gattgtcatggtttgtaattttttggcatttttcaaaatatattttgataacaaaagctcacattgtaggcct-gaaacg-ttccaaatagtgcaagttc |
238 |
Q |
| |
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|||| ||||| ||||||| || | ||||| |||||||||||||||| ||||| |||||||| ||||||| || |||||| ||| || |||||||||| |
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| T |
32247225 |
gattttcatgatttgtaacattcttgcattcttcaaaatatattttgctaacataagctcactttgtaggtctggaaacgcatcc--attgtgcaagttc |
32247128 |
T |
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| Q |
239 |
taaggtatgatga |
251 |
Q |
| |
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||||||||||||| |
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| T |
32247127 |
taaggtatgatga |
32247115 |
T |
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