View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18308_high_3 (Length: 381)
Name: NF18308_high_3
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18308_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 34790486 - 34790812
Alignment:
| Q |
18 |
ttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790486 |
ttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagct |
34790585 |
T |
|
| Q |
118 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttgtctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34790586 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttctctt |
34790685 |
T |
|
| Q |
218 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttctggtatcgttagcattaggaggcttgttgactacgatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790686 |
tgagtggtttccaagggttagtttatatggccttgtttacaatttgatcactgctattttctggtatcgttagcattaggaggcttgttgactacgatat |
34790785 |
T |
|
| Q |
318 |
tctgtgttaaatttgttaataaaacaa |
344 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
34790786 |
tctgtgttaaatttgttattaaaacaa |
34790812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 2288287 - 2287961
Alignment:
| Q |
18 |
ttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagct |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288287 |
ttcagatcatcagctccggatttaaaagaagaaagggcaatgctattagagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagct |
2288188 |
T |
|
| Q |
118 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttgtctt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2288187 |
tagtccagtctaagctgcccaagaagctcaag---aagagaagacaagtttctactgaagatggttcttctaggtatgtaactaactcattgtttgtctt |
2288091 |
T |
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| Q |
218 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttct-ggtatcgttagcattagg--aggcttgttgactacga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||||||||| || |
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| T |
2288090 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttggtcactgctagtttctgggtatcattagcattaggcttggcttgttgactatga |
2287991 |
T |
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| Q |
315 |
tattctgtgttaaatttgttaataaaacaa |
344 |
Q |
| |
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||| |||||||||||||||||||||||||| |
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| T |
2287990 |
tatcctgtgttaaatttgttaataaaacaa |
2287961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 49275741 - 49275574
Alignment:
| Q |
23 |
atcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagcttagtc |
122 |
Q |
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||||||||||||| || || |||||||||||| ||||| |||| ||||||||| |||||||||||||||||||| ||| | |||||||| ||||| ||| |
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| T |
49275741 |
atcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggcttaacttggaggcttcatctggagagttgggtgatgttagcttggtc |
49275642 |
T |
|
| Q |
123 |
cagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctag |
190 |
Q |
| |
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| | |||||||||||||||||| ||||||||||| || || || |||| ||||||||||||||||| |
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| T |
49275641 |
ctgcctaagctgcccaagaagcaacagaagaagagacgaaaacttactaccgaagatggttcttctag |
49275574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 49279307 - 49279186
Alignment:
| Q |
23 |
atcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttcatctggggagctaggtgatgtcagcttagtc |
122 |
Q |
| |
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||||||||||||| || || |||||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||| | |||||||| ||||||||| |
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| T |
49279307 |
atcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtc |
49279208 |
T |
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| Q |
123 |
cagtctaagctgcccaagaagc |
144 |
Q |
| |
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| | |||||||||||||||||| |
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| T |
49279207 |
ctgcctaagctgcccaagaagc |
49279186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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