View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18308_low_1 (Length: 838)
Name: NF18308_low_1
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18308_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 779; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 15 - 822
Target Start/End: Original strand, 49114699 - 49115508
Alignment:
| Q |
15 |
cacagagcctggaccaccttcctcttttgtgtaaccatcctataaaacacaagttgcattacaacacatgttagtaacattcccaatgtgtcaaatgagt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49114699 |
cacagagcctggaccaccttcctcttttgtgtaaccatcctataaaacacaagttgcattacaacacatgttagtaacattcccaatgtgtcaaatgagt |
49114798 |
T |
|
| Q |
115 |
agcaaattgagttgacaacctaaaagtacaaacaactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaata |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49114799 |
agcaaattgagttgacaacctaaaagtacaaacaactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaata |
49114898 |
T |
|
| Q |
215 |
tgaccactatggacaccaccttttccaagattgaacttgggaacttttaggccattaaataatggattggaactatcagatattccatatggtttattag |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49114899 |
tgaccactatggacaccacctttttcaagattgaacttgggaacttttaggccattaaataatggattggaaccatcagatattccatatggtttattag |
49114998 |
T |
|
| Q |
315 |
aagtaattacagttatgttcatatactccatttctgcaaattcattatctcctttgtgattattgggtttactcatgatggagacagccacaccagtcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49114999 |
aagtaattacagttatgttcatatactccatttctgcaaattcattatctcctttgtgattattgggtttactcatgatggagacagccacaccagtcat |
49115098 |
T |
|
| Q |
415 |
aaaagagtcccacataaaataactctgttaacaat--atcattttttaatatcagatcttttatactccatcaaacatgatacatgtaaatttacgtgtt |
512 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
49115099 |
aaaagagtcccacataaaataactctgttaacaatgaatcattttttaatatcagatcttttatactccatcaaacatgaaacacgtaaatttacgtgtt |
49115198 |
T |
|
| Q |
513 |
tcatgtttgatgcatatgtaataagtaacacagtataatgacattataaactcattaagagagattactgaatagaattcgttgtcgaaccaagtatcac |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
49115199 |
tcatgtttgatgcatatgtaataagtaacacagtataatgacattataaactcattaagagagattaccgaatagaattcgttgtcgaaccaagtatcac |
49115298 |
T |
|
| Q |
613 |
gagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcagtgatggggattgtgtttga |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49115299 |
gagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcagtgatggggattgtgtttga |
49115398 |
T |
|
| Q |
713 |
tgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaacatagctatccatgtatgtttc |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49115399 |
tgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaacatagctatccatgtatgtttc |
49115498 |
T |
|
| Q |
813 |
tgttagatac |
822 |
Q |
| |
|
|||||||||| |
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| T |
49115499 |
tgttagatac |
49115508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 129 - 444
Target Start/End: Original strand, 49102775 - 49103090
Alignment:
| Q |
129 |
acaacctaaaagtacaaacaactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaatatgaccactatggac |
228 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
49102775 |
acaacctaaaagaacaatcaactacctgacattttcctttgccgttcttcacaaagcaataaggatctctgagtccttgttgaatatgaccactaaggac |
49102874 |
T |
|
| Q |
229 |
accaccttttccaagattgaacttgggaacttttaggccattaaataatggattggaactatcagatattccatatggtttattagaagtaattacagtt |
328 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| || | ||||||||| |
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| T |
49102875 |
accacctttttcaagattgaacttaggaacttttaggccattaaataatggattggagccatctgatatcccatatggtttatttgaggcaattacagta |
49102974 |
T |
|
| Q |
329 |
atgttcatatactccatttctgcaaattcattatctcctttgtgattattgggtttactcatgatggagacagccacaccagtcataaaagagtcccaca |
428 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||| || || | ||||| ||| ||||||||||||| |
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| T |
49102975 |
atgttcatatactccatttcagcaaattcattttctcctttatggttattggatttactcatgatggacacggctataccagccatgaaagagtcccaca |
49103074 |
T |
|
| Q |
429 |
taaaataactctgtta |
444 |
Q |
| |
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| |||||||||||||| |
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| T |
49103075 |
tgaaataactctgtta |
49103090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 557 - 797
Target Start/End: Original strand, 49103185 - 49103428
Alignment:
| Q |
557 |
tataaactcattaagagagattactgaatagaattcgttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtg |
656 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||||||| | || |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
49103185 |
tataaattaattaagagatattaccgaatagaattcatcatcaaaccaagtatcacgagttattttcaaggatttgaaacaatattgtgtctcatatgtg |
49103284 |
T |
|
| Q |
657 |
tcttgactcttttcaaatgcatcaaagaattgtgcagtgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatca |
756 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||| |
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| T |
49103285 |
tcttgactcttttcaaatgcttcaaagaattccttagtgatagggattgtgtttgatgcatcaataggaacaagggtgataggaagtccagaatgaatca |
49103384 |
T |
|
| Q |
757 |
cct--atataaaacaatatatacttttt-gtcacaaacatagct |
797 |
Q |
| |
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||| ||||||||| || | |||||||| ||||||||||||||| |
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| T |
49103385 |
cctacatataaaacgatgtttactttttggtcacaaacatagct |
49103428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 49115210 - 49115167
Alignment:
| Q |
481 |
catcaaacatgatacatgtaaatttacgtgtttcatgtttgatg |
524 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
49115210 |
catcaaacatgaaacacgtaaatttacgtgtttcatgtttgatg |
49115167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 147 - 441
Target Start/End: Complemental strand, 6957407 - 6957113
Alignment:
| Q |
147 |
caactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaatatgaccactatggacaccaccttttccaagatt |
246 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
6957407 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttgaatatgaccactatgcacaccacctttcttaagatt |
6957308 |
T |
|
| Q |
247 |
gaacttgggaacttttaggccattaaataatggattggaactatcagatattccatatggtttattagaagtaattacagttatgttcatatactccatt |
346 |
Q |
| |
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||| || |||||||| ||||||| |||||| |||||||| | ||||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||| |
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|
| T |
6957307 |
gaatttaggaactttaaggccatcaaataagggattggagccatcagatataccataaggtttgtttgaagtaattacagttatgtttatatactccatt |
6957208 |
T |
|
| Q |
347 |
tctgcaaattcattatctcctttgtgattattgggtttactcatgatggagacagccacaccagtcataaaagagtcccacataaaataactctg |
441 |
Q |
| |
|
|| ||||||||||| || ||||| | |||| | || |||||||| || || || |||||| | | |||||||||||||||||||||||||| |
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| T |
6957207 |
tcagcaaattcattttcccctttctttctattagagttcctcatgattgaaactgctacaccacttgtgaaagagtcccacataaaataactctg |
6957113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 594 - 760
Target Start/End: Complemental strand, 6956816 - 6956650
Alignment:
| Q |
594 |
ttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcag |
693 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||| ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||| | || |
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| T |
6956816 |
ttgtcaaaccaagtatcatgagccattttcaaggacttgaaacagtattgtgcctcgtatgtgtcttgactcttttcaaattcatcaaagaattcttcac |
6956717 |
T |
|
| Q |
694 |
tgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcaccta |
760 |
Q |
| |
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| |||||||||||||||| ||||||||||||||| ||||| | ||||| ||||||||||||||||| |
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| T |
6956716 |
ttatggggattgtgtttgttgcatcaagaggaacaagggtaataggaataccagaatgaatcaccta |
6956650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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