View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18308_low_2 (Length: 591)
Name: NF18308_low_2
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18308_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 54101395 - 54100818
Alignment:
| Q |
1 |
taaggttcaattgcaaacaatgtcaaatacaatatgagttgttatagatggagaattaaggattgcgatgttagaggtgtcaaacacaagaaggttcaat |
100 |
Q |
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| T |
54101395 |
taaggttcaattgcaaacaatgtcaaatacaatatgagttgttatagatggagaattaaggattgcgatgttagaggtgtcaaacacaagaaggttcaat |
54101296 |
T |
|
| Q |
101 |
agtaaacaatgtcaatagaatatgagtttttacagatggagaattaagggaaggtggtcgactattttacaagaattttaaatctcacgaatctgatgaa |
200 |
Q |
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| T |
54101295 |
agtaaacaatgtcaatagaatatgagtttttacatatggagaattaagggaaggtggtcgactattttacaagaattttaaatctcacgaatctgatgaa |
54101196 |
T |
|
| Q |
201 |
aacaatgatgtcgagtataacagtgacgcgtcttttccatcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacgg |
300 |
Q |
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| T |
54101195 |
aacaatgatgtcgagtataatagtgacgcgtcttttccatcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacgg |
54101096 |
T |
|
| Q |
301 |
tcatgtctttgtgacgtacatttgggaacacttttaagaggcaagaaaacgcacatttgtacaaaagctacagaaattaaactgacataaaacttcacaa |
400 |
Q |
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| T |
54101095 |
tcatgtctttgtgacgtacatttgggaacactttcaagaggcaagaaaacgcacatttgtacaaaagctacagaaattaaactgacataaaacttcacaa |
54100996 |
T |
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| Q |
401 |
gatttagacacgataaatgtgtggcaaacaaaggggtaggatctaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccc |
500 |
Q |
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| T |
54100995 |
gatttagacacgacaaatgtgtggcaaacaaaggggtaggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcatgttcaaccc |
54100896 |
T |
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| Q |
501 |
tagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatg |
578 |
Q |
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| T |
54100895 |
tagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatg |
54100818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 139 - 576
Target Start/End: Complemental strand, 54100832 - 54100397
Alignment:
| Q |
139 |
gagaattaagggaaggtggtcgactattttacaagaattttaaatctcacgaatctgatgaaaacaatgatgtcgagtataacagtgacgcgtcttttcc |
238 |
Q |
| |
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||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54100832 |
gagaattaagggatggtggccggctattttacaagaattttaaatctcacgaatctcatgaaaacaatgatgtcgagtataacagtgacgcatcttttcc |
54100733 |
T |
|
| Q |
239 |
atcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacggtcatgtctttgtgacgtacatttgggaacacttttaag |
338 |
Q |
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| T |
54100732 |
atcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgggaacactttcaag |
54100633 |
T |
|
| Q |
339 |
aggcaagaaaacgcacatttgtacaaaagctacagaaattaaactgacataaaacttcacaagatttagacacgataaatgtgtggcaaacaaaggggta |
438 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54100632 |
aggcaagaaaaagcacatttgtacaaaagctacagaaattaaacttacat--aacttcacaatatttagacacgataaatgtgtggcaaacaaaggggta |
54100535 |
T |
|
| Q |
439 |
ggatctaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactagaaggttggaagggtgtgggttcaaaccaa |
538 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54100534 |
ggatccaattccaaattcaaaccaaggatatcatgtatgctttctcaacgcatgttcaaccatagtactagaaggttggaagggtgtgggttcaaaccaa |
54100435 |
T |
|
| Q |
539 |
catgttagacataaatgagggtgaagagaattaaggga |
576 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
54100434 |
catgttagacataaatgagggtgaagagaactaaggga |
54100397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 139 - 563
Target Start/End: Complemental strand, 54100409 - 54099979
Alignment:
| Q |
139 |
gagaattaagggaaggtggtcgactattttacaagaattttaaatctcacgaatctgatgaaaacaatgatgtcgagtataacagtgacgcgtcttttcc |
238 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| | |||||||| |
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| T |
54100409 |
gagaactaagggaaggtggccgactattttacaagaattttaaatctcacgaatctcatgaaaataatgatgtcgagtataa--gtgacacatcttttcc |
54100312 |
T |
|
| Q |
239 |
atcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacggtcatgtctttgtgacgtacatttgggaacacttttaag |
338 |
Q |
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| T |
54100311 |
atcaattagtaacaaggatacacttaaggatgtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgtgaacactttcaag |
54100212 |
T |
|
| Q |
339 |
aggcaagaaaacgcacatttgtacaaaagctacagaaattaaactgacataaaacttcacaagatttagacacgataaatgtgtggcaaacaaaggggt- |
437 |
Q |
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| T |
54100211 |
agacaagaaaacagacatttgtacaaaagctacaaaaattaaacttacataaaacttcacaagatttagacatgataaatgtgtggcaaacaaaggggta |
54100112 |
T |
|
| Q |
438 |
--------aggatctaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactagaaggttggaagggtgtgggt |
529 |
Q |
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| T |
54100111 |
ggaagggtaggatccaattccaaattcaaatcaaggatatcacgtatgctttctcaacgcaggttcaaccctagtact-gaaggttggaagggtgtgggt |
54100013 |
T |
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| Q |
530 |
tcaaaccaacatgttagacataaatgagggtgaa |
563 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
54100012 |
tcaaaccaacatattagacataaatgagggtgaa |
54099979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 54101423 - 54101335
Alignment:
| Q |
62 |
attgcgatgttagaggtgtcaaacacaagaaggttcaatagtaaacaatgtc-aatagaatatgagtttttacagatggagaattaagg |
149 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||| | |||||||||| |||| |||||||||| ||| |||||||||||||||| |
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| T |
54101423 |
attgcgatgttagaggtgtcaaatacaataaggttcaattgcaaacaatgtcaaatacaatatgagttgttatagatggagaattaagg |
54101335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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