View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18308_low_3 (Length: 382)

Name: NF18308_low_3
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18308_low_3
NF18308_low_3
[»] chr2 (24 HSPs)
chr2 (19-372)||(9321633-9321986)
chr2 (83-299)||(10372588-10372804)
chr2 (84-306)||(9292638-9292857)
chr2 (196-372)||(9329418-9329598)
chr2 (107-353)||(9060271-9060517)
chr2 (148-353)||(8572675-8572879)
chr2 (148-351)||(9316793-9316999)
chr2 (133-306)||(10353901-10354074)
chr2 (189-306)||(10336623-10336740)
chr2 (194-306)||(10348620-10348732)
chr2 (197-306)||(12018134-12018243)
chr2 (193-306)||(7114865-7114978)
chr2 (189-306)||(9275335-9275452)
chr2 (189-306)||(9283394-9283511)
chr2 (189-306)||(12005385-12005502)
chr2 (148-273)||(14551091-14551215)
chr2 (196-295)||(9357935-9358034)
chr2 (197-306)||(12011813-12011922)
chr2 (197-306)||(7612716-7612825)
chr2 (197-276)||(9365415-9365494)
chr2 (244-303)||(8578748-8578807)
chr2 (201-306)||(11986745-11986850)
chr2 (56-108)||(9329287-9329339)
chr2 (206-306)||(17565334-17565434)
[»] chr3 (2 HSPs)
chr3 (133-306)||(37463278-37463451)
chr3 (232-306)||(39428733-39428807)
[»] scaffold0667 (1 HSPs)
scaffold0667 (179-306)||(5261-5388)
[»] chr4 (2 HSPs)
chr4 (133-306)||(26575635-26575808)
chr4 (189-273)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (175-306)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (164-291)||(29452586-29452713)
chr1 (148-291)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (198-306)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 9321633 - 9321986
Alignment:
Q  19 gttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggatggttgagtggaatcatcatggattta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9321633 gttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgattttggtggtgaaaggatggttgagtggaatcatcatggattta 9321732  T
Q  119 gagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321733 gagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatga 9321832  T
Q  219 agtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattc 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321833 agtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattc 9321932  T
Q  319 cggcggaggaacatcactcgccattggaaggaaggttcgttctagggttctgtg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9321933 cggcggaggaacatcactcgccattggaaggaaggttcgttctagggttgtgtg 9321986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 83 - 299
Target Start/End: Original strand, 10372588 - 10372804
Alignment:
Q  83 gtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatc---atcgatttggagttggtagagatcgaatttgtgttgaatgatta 179  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| |||||| |||||    
T  10372588 gtgaaaggatggttgagtggaatcctc---gatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggatta 10372684  T
Q  180 aggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtga 279  Q
    |||||||| |||||||||||| ||| |||||||||||||| | ||| ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||||    
T  10372685 aggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtga 10372784  T
Q  280 ttttaccggtaagcgggaga 299  Q
    ||||||||||||||||||||    
T  10372785 ttttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 84 - 306
Target Start/End: Original strand, 9292638 - 9292857
Alignment:
Q  84 tgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaagga 183  Q
    |||||||||||||||||||||| |||   || || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  9292638 tgaaaggatggttgagtggaataatc---gacttggagaaatcatcatcatcatcgatttggagttggtagagatcgaatttgtgtcgaaggattaagga 9292734  T
Q  184 tcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatttt 283  Q
    |||  |||||||||||||||| ||||||||  |||||  ||| |||||||||| ||||||||||||||| ||| |||||||||||  |||||||||||||    
T  9292735 tcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgatttt 9292834  T
Q  284 accggtaagcgggagaggatttc 306  Q
    || |||| |||||||| ||||||    
T  9292835 actggtacgcgggagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 196 - 372
Target Start/End: Original strand, 9329418 - 9329598
Alignment:
Q  196 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 295  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  296 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttctgtg 372  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    |||||||||||||||||||||||| ||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtg 9329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 107 - 353
Target Start/End: Complemental strand, 9060517 - 9060271
Alignment:
Q  107 atcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttga 203  Q
    ||||| |||||||||||||||||||   |||||| ||||||||||||||||||| |||||||| ||| |||||   ||||| |||||| |||   |||||    
T  9060517 atcattgatttagagaaatcatcat---catcgacttggagttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttga 9060421  T
Q  204 gatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 303  Q
    | | ||||||  |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| |||    
T  9060420 ggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagat 9060321  T
Q  304 ttcctccaacaattccggcggaggaacatcactcgccattggaaggaagg 353  Q
    |||  | |  | |||||||||| ||||||||  |||||||||||||||||    
T  9060320 ttcggcaagtatttccggcggaagaacatcagccgccattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 353
Target Start/End: Complemental strand, 8572879 - 8572675
Alignment:
Q  148 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 247  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||||    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  248 gatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaa 347  Q
    ||||| ||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||    |  | ||||| |||| ||||||||| |||||||||||    
T  8572779 gattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaa 8572681  T
Q  348 ggaagg 353  Q
    ||||||    
T  8572680 ggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 148 - 351
Target Start/End: Original strand, 9316793 - 9316999
Alignment:
Q  148 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgcgaatcgattatggattta 244  Q
    ||||||||| ||| ||||||  |||| ||||||||||||| ||||||||||   |||||| |||||||||||||||| ||| ||||| ||||  ||||||    
T  9316793 ttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagattta 9316892  T
Q  245 agtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattg 344  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| |||||| ||||||  | |  | |||||||||| || | |||  ||||||||    
T  9316893 agtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattg 9316992  T
Q  345 gaaggaa 351  Q
    |||||||    
T  9316993 gaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 10353901 - 10354074
Alignment:
Q  133 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 232  Q
    |||||||||||  | |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  ||||||    
T  10353901 atcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 10354000  T
Q  233 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 306  Q
    |||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  10354001 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 10354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 10336623 - 10336740
Alignment:
Q  189 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 288  Q
    ||||||||||||  || |||||||||||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  10336623 tgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 10336722  T
Q  289 taagcgggagaggatttc 306  Q
    ||| ||||||| ||||||    
T  10336723 taaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 10348620 - 10348732
Alignment:
Q  194 gaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 293  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  294 gggagaggatttc 306  Q
    |||||| ||||||    
T  10348720 gggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 12018243 - 12018134
Alignment:
Q  197 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 296  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  297 agaggatttc 306  Q
    ||| ||||||    
T  12018143 agaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 7114978 - 7114865
Alignment:
Q  193 ggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaag 292  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||  ||| |||| |    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtagg 7114879  T
Q  293 cgggagaggatttc 306  Q
    || |||| ||||||    
T  7114878 cgagagaagatttc 7114865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 9275335 - 9275452
Alignment:
Q  189 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 288  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||    
T  9275335 tgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactgg 9275434  T
Q  289 taagcgggagaggatttc 306  Q
    ||| ||||||| ||||||    
T  9275435 taaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 9283511 - 9283394
Alignment:
Q  189 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 288  Q
    |||||||| ||||||| |||||||||||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||    
T  9283511 tgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactgg 9283412  T
Q  289 taagcgggagaggatttc 306  Q
    ||||| ||||| ||||||    
T  9283411 taagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 12005502 - 12005385
Alignment:
Q  189 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 288  Q
    |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| |||||||||||| |   ||    
T  12005502 tgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggagg 12005403  T
Q  289 taagcgggagaggatttc 306  Q
    ||||||||||| ||||||    
T  12005402 taagcgggagaagatttc 12005385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 273
Target Start/End: Original strand, 14551091 - 14551215
Alignment:
Q  148 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 247  Q
    ||||||||||| | | |||||| ||| ||||||||| | | ||||||||||||| || ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  248 gatttagaagttgatcggaattggag 273  Q
    ||||| ||||||||||||||||||||    
T  14551190 gattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  196 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 295  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 12011922 - 12011813
Alignment:
Q  197 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 296  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  297 agaggatttc 306  Q
    ||| ||||||    
T  12011822 agaagatttc 12011813  T

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Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  197 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 296  Q
    |||||||| ||||||||  |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  297 agaggatttc 306  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  197 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 276  Q
    ||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  244 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 303  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  201 tgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagag 300  Q
    |||| ||||| ||| |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| |||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  301 gatttc 306  Q
    ||||||    
T  11986750 gatttc 11986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 9329287 - 9329339
Alignment:
Q  56 ttacgtgtgacaggagtgatgttggtggtgaaaggatggttgagtggaatcat 108  Q
    ||||| ||||||||||  ||||||||| |||||||||||||||||||||||||    
T  9329287 ttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcat 9329339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 17565434 - 17565334
Alignment:
Q  206 tgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggattt 305  Q
    ||||||||| ||||||  || ||||| ||||   ||||||||||||| || |||||||||| | |||| || |||| ||| |||||||| ||||||||||    
T  17565434 tgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggattt 17565335  T
Q  306 c 306  Q
    |    
T  17565334 c 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 37463278 - 37463451
Alignment:
Q  133 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 232  Q
    ||||||||||||||||||||||| |||| | |||| | ||||||||| |||| || |||||| |||||||||||||||||||||||||| ||| ||||||    
T  37463278 atcatcgatttggagttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcg 37463377  T
Q  233 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 306  Q
    ||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  37463378 attaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttc 37463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 39428733 - 39428807
Alignment:
Q  232 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 306  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

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Target: scaffold0667 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 5261 - 5388
Alignment:
Q  179 aaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtg 278  Q
    ||||||| | |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5261 aaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtg 5360  T
Q  279 attttaccggtaagcgggagaggatttc 306  Q
    ||||||||||||||||||||| ||||||    
T  5361 attttaccggtaagcgggagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 26575635 - 26575808
Alignment:
Q  133 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 232  Q
    ||||| |||||  |||||||||| ||||||||||  | ||| ||||||||||||| || |||||||| |||| |||||||||||||| | ||  ||||||    
T  26575635 atcattgatttcaagttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcg 26575734  T
Q  233 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 306  Q
    |||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  26575735 attaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttc 26575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 561982 - 562066
Alignment:
Q  189 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 273  Q
    ||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||||  |||| ||| || |||||||| ||||    
T  561982 tgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 41966073 - 41965942
Alignment:
Q  175 gattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggaga 274  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||    
T  41966073 gattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggaga 41965974  T
Q  275 agtgattttaccggtaagcgggagaggatttc 306  Q
    | |||||||||||||||  |||||| ||||||    
T  41965973 actgattttaccggtaatagggagaagatttc 41965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 29452713 - 29452586
Alignment:
Q  164 ttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatc 263  Q
    |||||| ||| ||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||| ||||| ||||||||| || ||||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  264 ggaattggagaagtgattttaccggtaa 291  Q
    ||||| |||| || |||| |||||||||    
T  29452613 ggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 29467203 - 29467060
Alignment:
Q  148 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 247  Q
    |||||||| |||| | |||||| ||| ||||||| | ||| |||||||||||  ||| ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  248 gatttagaagttgatcggaattggagaagtgattttaccggtaa 291  Q
    ||||| || ||||| |||||| |||| || |||| |||||||||    
T  29467103 gattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 36225571 - 36225679
Alignment:
Q  198 ttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggga 297  Q
    ||||||| ||||| ||  |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| || ||||  ||  ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  298 gaggatttc 306  Q
    |||||||||    
T  36225671 gaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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