View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18308_low_5 (Length: 348)
Name: NF18308_low_5
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18308_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 33961845 - 33961514
Alignment:
| Q |
1 |
ttgtgtcaggcagagccacgtgctgccttaaatcttgcatcttttggaagtagccatgctttcaaacttaccaaggaagatattgttttgtattcagcta |
100 |
Q |
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| T |
33961845 |
ttgtgtcaggcagagccacgtgctgccttaaatcttgcatcttttggaagtagccatgctttcaaacttacaaaggaagatattgttttgtattcagcta |
33961746 |
T |
|
| Q |
101 |
aggtatgataaaatactgcattatctgtttggtattaactttatcttgaagcttaatatgggtagtataagcaaagaacctattatgaaattacaacctg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33961745 |
aggtatggtaaaatactgcattatctgtttggtattaactttatcttgaagcttaatatgggtagtataagcaaaaaacctattatgaaattacaacctg |
33961646 |
T |
|
| Q |
201 |
ctattctaacttccaatcctttctagcaacaccttatannnnnnnatccacgaactagtttgtgttttttatttgttctctgatttaaaatcaatttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33961645 |
ctattctaacttccaatcctttctagcaacaccttatatttttttatccacaaactagtttgtgttttttatttgttctctgatttaaaatcaatttgtc |
33961546 |
T |
|
| Q |
301 |
aggttatccctggtaatgagtcccgtgtgatg |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33961545 |
aggttatccctggtaatgagtcccgtgtgatg |
33961514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42921495 - 42921598
Alignment:
| Q |
1 |
ttgtgtcaggcagagccacgtgctgccttaaatcttgcatcttttggaagtagccatgctttcaaacttaccaaggaagatattgttttgtattcagcta |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||||| |||||||| ||||||||| |||| || |||||||| | ||| ||||||||||||| |
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| T |
42921495 |
ttgtgtcaggcagaaccacgtgctgccttgaaccttgcatcttacggaagtagtcatgctttcgaactgacaaaggaagacactgtgttgtattcagcta |
42921594 |
T |
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| Q |
101 |
aggt |
104 |
Q |
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|||| |
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| T |
42921595 |
aggt |
42921598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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