View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18308_low_6 (Length: 238)
Name: NF18308_low_6
Description: NF18308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18308_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4575336 - 4575555
Alignment:
| Q |
1 |
tcctactgatattgcatataatcccaatcaaatatggttgatgcaacctcaattgcgattatagagatatcgcaaccttgatgttcggcccatattgtga |
100 |
Q |
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| T |
4575336 |
tcctactgatattgcatataatcccaatcaaatgtggttgatgcaacctcaattgcgattatagagatatcgcaaccttgatgttcggcccatattgtga |
4575435 |
T |
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| Q |
101 |
ccgcaaaccttttttaaaaaccataacatacacacacagatctcttaagaagaaaaacggaacaaaaatgattacctttgaatggtacttgactattctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
4575436 |
ccgcaaaccttttttaaaaaccataacatacacacacagatctcttaagaagaaaaagggaacaaaaatgattacctttgaatggtacttgactattcag |
4575535 |
T |
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| Q |
201 |
atacattttagtactgagca |
220 |
Q |
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||||||||||| |||||||| |
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| T |
4575536 |
atacattttaggactgagca |
4575555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 4561539 - 4561762
Alignment:
| Q |
7 |
tgatattgcatataatcccaatcaaatatggttgatgcaacctcaattgcgattatagagatatcgcaaccttgatgttcggcccatattgtgaccgcaa |
106 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4561539 |
tgatattgcatataatcccaatcaaatctggctgatgaaacctcaattgtgattatagagacatcgcaaccttgatgttcggcccatattgtgaccgcaa |
4561638 |
T |
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| Q |
107 |
accttttttaaaaaccataacat----------acacacacagatctcttaagaagaaaaacggaacaaaaatgattacctttgaatggtacttgactat |
196 |
Q |
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| T |
4561639 |
agcttttttaaaaaccataacatacacacaaaaacacacacagatctcctaaaaagaaaaagggaacagaaatgattacctttgaatggtagttgactat |
4561738 |
T |
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| Q |
197 |
tctgatacattttagtactgagca |
220 |
Q |
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| T |
4561739 |
tctgatacattttaggactgagca |
4561762 |
T |
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