View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_high_1 (Length: 1245)

Name: NF18309_high_1
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_high_1
NF18309_high_1
[»] chr4 (38 HSPs)
chr4 (567-1229)||(30468386-30469050)
chr4 (67-443)||(30469035-30469415)
chr4 (67-268)||(39481933-39482138)
chr4 (794-949)||(37861163-37861318)
chr4 (790-949)||(46963854-46964013)
chr4 (139-266)||(8955779-8955906)
chr4 (139-252)||(33288421-33288535)
chr4 (139-269)||(45590889-45591019)
chr4 (139-259)||(36971195-36971315)
chr4 (789-915)||(46362766-46362892)
chr4 (791-923)||(19399832-19399964)
chr4 (139-243)||(50774084-50774188)
chr4 (139-273)||(34334479-34334617)
chr4 (153-269)||(49162249-49162365)
chr4 (139-251)||(26025546-26025658)
chr4 (139-254)||(18835854-18835969)
chr4 (67-130)||(33288589-33288652)
chr4 (69-129)||(49162134-49162194)
chr4 (67-130)||(34334362-34334425)
chr4 (791-950)||(16692071-16692230)
chr4 (67-130)||(8955960-8956023)
chr4 (67-130)||(45590772-45590835)
chr4 (791-950)||(45891763-45891923)
chr4 (67-129)||(18835735-18835799)
chr4 (791-923)||(30666829-30666960)
chr4 (793-914)||(51164562-51164683)
chr4 (67-106)||(36968368-36968407)
chr4 (794-924)||(44540136-44540267)
chr4 (786-924)||(22318089-22318227)
chr4 (850-952)||(2319172-2319274)
chr4 (821-924)||(49014507-49014611)
chr4 (67-130)||(50774242-50774310)
chr4 (470-536)||(17874383-17874450)
chr4 (789-844)||(31217013-31217068)
chr4 (818-924)||(6942424-6942530)
chr4 (794-920)||(13435396-13435522)
chr4 (791-821)||(26740738-26740768)
chr4 (439-472)||(1391466-1391499)
[»] chr1 (53 HSPs)
chr1 (67-268)||(1236071-1236277)
chr1 (139-269)||(47669266-47669396)
chr1 (139-269)||(46220406-46220536)
chr1 (139-266)||(9831650-9831777)
chr1 (139-269)||(48564964-48565094)
chr1 (139-269)||(10737701-10737831)
chr1 (139-267)||(3384597-3384725)
chr1 (139-269)||(8889589-8889720)
chr1 (139-243)||(4817416-4817520)
chr1 (139-254)||(4055631-4055746)
chr1 (139-254)||(18126997-18127112)
chr1 (792-924)||(18919256-18919388)
chr1 (794-924)||(34462722-34462852)
chr1 (139-271)||(39241299-39241431)
chr1 (67-130)||(8889472-8889535)
chr1 (434-556)||(38225631-38225751)
chr1 (67-130)||(4055514-4055577)
chr1 (67-130)||(4817299-4817362)
chr1 (67-130)||(10737885-10737948)
chr1 (67-130)||(18126881-18126944)
chr1 (787-914)||(37705306-37705433)
chr1 (67-130)||(46220289-46220352)
chr1 (794-908)||(1640218-1640332)
chr1 (792-924)||(40619532-40619663)
chr1 (67-130)||(47669149-47669212)
chr1 (71-130)||(48564851-48564910)
chr1 (141-269)||(37875727-37875854)
chr1 (67-130)||(9831533-9831596)
chr1 (793-924)||(47853520-47853654)
chr1 (139-220)||(7414354-7414436)
chr1 (67-130)||(7414237-7414300)
chr1 (82-130)||(3384779-3384827)
chr1 (794-920)||(8301712-8301838)
chr1 (444-546)||(5598039-5598139)
chr1 (470-556)||(28381451-28381537)
chr1 (67-116)||(1749521-1749570)
chr1 (827-924)||(24439145-24439242)
chr1 (791-923)||(5327737-5327869)
chr1 (74-122)||(39241188-39241236)
chr1 (794-844)||(5327636-5327686)
chr1 (139-225)||(26842587-26842673)
chr1 (143-225)||(49112318-49112400)
chr1 (791-904)||(37209790-37209903)
chr1 (817-950)||(51540702-51540836)
chr1 (791-843)||(30058348-30058400)
chr1 (797-869)||(36438340-36438412)
chr1 (782-825)||(3150624-3150667)
chr1 (797-871)||(1607324-1607398)
chr1 (67-125)||(26842469-26842527)
chr1 (794-923)||(31501062-31501191)
chr1 (852-914)||(38081625-38081687)
chr1 (791-844)||(19234793-19234846)
chr1 (236-269)||(46220259-46220292)
[»] chr7 (51 HSPs)
chr7 (67-269)||(9332391-9332598)
chr7 (139-269)||(6387692-6387822)
chr7 (139-269)||(17904310-17904440)
chr7 (139-269)||(29890826-29890956)
chr7 (139-269)||(37179331-37179462)
chr7 (139-269)||(46467335-46467465)
chr7 (139-269)||(26770326-26770456)
chr7 (139-269)||(29427162-29427294)
chr7 (139-269)||(4405256-4405386)
chr7 (139-269)||(31502653-31502784)
chr7 (139-232)||(41921892-41921984)
chr7 (155-269)||(6389887-6390001)
chr7 (818-924)||(47375814-47375919)
chr7 (139-272)||(9876410-9876542)
chr7 (67-130)||(6389762-6389825)
chr7 (67-130)||(17904193-17904256)
chr7 (67-130)||(29427348-29427411)
chr7 (67-130)||(46467519-46467582)
chr7 (139-251)||(48049149-48049261)
chr7 (67-130)||(26770209-26770272)
chr7 (67-126)||(31503125-31503184)
chr7 (67-126)||(37179519-37179578)
chr7 (71-129)||(9876297-9876355)
chr7 (800-924)||(12879697-12879822)
chr7 (139-251)||(31858110-31858222)
chr7 (67-130)||(19523879-19523942)
chr7 (67-130)||(41922038-41922101)
chr7 (470-568)||(45166113-45166210)
chr7 (139-251)||(5514926-5515038)
chr7 (139-251)||(12252219-12252331)
chr7 (67-130)||(6387876-6387939)
chr7 (71-130)||(29891010-29891069)
chr7 (71-129)||(4405143-4405201)
chr7 (139-269)||(9215463-9215592)
chr7 (139-269)||(46690014-46690140)
chr7 (446-536)||(39693938-39694026)
chr7 (199-249)||(19523813-19523863)
chr7 (794-923)||(21212687-21212816)
chr7 (821-950)||(16831589-16831718)
chr7 (139-251)||(33974641-33974753)
chr7 (793-924)||(30003743-30003873)
chr7 (139-269)||(22753068-22753198)
chr7 (822-920)||(39511188-39511286)
chr7 (791-844)||(43951986-43952039)
chr7 (791-918)||(38850486-38850612)
chr7 (790-924)||(46276962-46277094)
chr7 (189-251)||(7839253-7839315)
chr7 (799-871)||(42244473-42244545)
chr7 (788-864)||(46603691-46603767)
chr7 (444-546)||(42964704-42964804)
chr7 (67-105)||(29722985-29723023)
[»] chr8 (34 HSPs)
chr8 (139-270)||(45334275-45334406)
chr8 (139-269)||(33837729-33837859)
chr8 (139-273)||(2508792-2508926)
chr8 (139-273)||(25106358-25106492)
chr8 (139-270)||(28379094-28379225)
chr8 (139-269)||(38495472-38495602)
chr8 (139-269)||(9740132-9740263)
chr8 (139-269)||(13469508-13469637)
chr8 (139-254)||(2626253-2626368)
chr8 (444-568)||(4311388-4311510)
chr8 (444-568)||(8565211-8565333)
chr8 (67-130)||(28378977-28379040)
chr8 (791-950)||(7042570-7042729)
chr8 (139-269)||(32183481-32183611)
chr8 (67-130)||(2508980-2509043)
chr8 (67-130)||(33837913-33837976)
chr8 (444-556)||(39298039-39298149)
chr8 (67-130)||(27793375-27793438)
chr8 (842-924)||(114139-114221)
chr8 (811-923)||(43108652-43108763)
chr8 (67-130)||(13469689-13469752)
chr8 (67-130)||(25106241-25106304)
chr8 (67-130)||(38495656-38495719)
chr8 (67-130)||(45334460-45334523)
chr8 (139-243)||(27793070-27793172)
chr8 (811-923)||(7637593-7637705)
chr8 (791-923)||(18181718-18181850)
chr8 (67-130)||(9740015-9740078)
chr8 (81-130)||(2626422-2626472)
chr8 (788-950)||(8059895-8060057)
chr8 (67-130)||(32183666-32183729)
chr8 (67-99)||(2626667-2626699)
chr8 (793-844)||(6108728-6108779)
chr8 (780-825)||(4993357-4993402)
[»] chr3 (46 HSPs)
chr3 (139-269)||(41349371-41349501)
chr3 (139-269)||(1351996-1352126)
chr3 (139-269)||(39528896-39529026)
chr3 (139-271)||(18997114-18997246)
chr3 (139-271)||(18999653-18999785)
chr3 (139-274)||(29014685-29014820)
chr3 (139-269)||(32677477-32677607)
chr3 (139-269)||(39518554-39518684)
chr3 (139-269)||(29371538-29371668)
chr3 (139-269)||(36737834-36737964)
chr3 (139-269)||(39806979-39807109)
chr3 (139-269)||(32840095-32840226)
chr3 (139-268)||(22157405-22157534)
chr3 (139-269)||(38855464-38855594)
chr3 (139-268)||(21974296-21974425)
chr3 (139-268)||(21996727-21996856)
chr3 (154-241)||(55367714-55367801)
chr3 (139-255)||(28228583-28228701)
chr3 (67-130)||(18996997-18997060)
chr3 (67-130)||(18999536-18999599)
chr3 (67-130)||(28228466-28228529)
chr3 (67-130)||(29014874-29014937)
chr3 (67-130)||(29371722-29371785)
chr3 (67-130)||(1352180-1352243)
chr3 (67-130)||(32677661-32677724)
chr3 (67-130)||(39528779-39528842)
chr3 (439-568)||(19982219-19982346)
chr3 (67-128)||(21974179-21974240)
chr3 (67-128)||(21996610-21996671)
chr3 (67-130)||(39807163-39807226)
chr3 (67-130)||(41349555-41349618)
chr3 (75-129)||(38855355-38855409)
chr3 (67-128)||(22157288-22157349)
chr3 (67-130)||(36738018-36738081)
chr3 (71-130)||(39518441-39518500)
chr3 (67-130)||(55365938-55366001)
chr3 (139-251)||(49040862-49040974)
chr3 (791-920)||(50170503-50170633)
chr3 (150-269)||(840730-840849)
chr3 (788-844)||(32733588-32733644)
chr3 (444-533)||(6985368-6985455)
chr3 (832-924)||(45318213-45318306)
chr3 (796-924)||(50129033-50129162)
chr3 (791-923)||(4127404-4127536)
chr3 (67-126)||(32839979-32840037)
chr3 (850-946)||(39625085-39625181)
[»] chr2 (31 HSPs)
chr2 (139-272)||(15233902-15234035)
chr2 (139-269)||(41252562-41252693)
chr2 (139-273)||(44104542-44104677)
chr2 (791-950)||(5577964-5578123)
chr2 (139-259)||(35792917-35793037)
chr2 (139-269)||(43040849-43040979)
chr2 (800-924)||(20556752-20556875)
chr2 (791-924)||(26009606-26009740)
chr2 (790-949)||(35977285-35977444)
chr2 (794-924)||(34074123-34074253)
chr2 (139-251)||(21727819-21727931)
chr2 (139-254)||(41643041-41643156)
chr2 (67-130)||(15233785-15233848)
chr2 (67-129)||(31296113-31296175)
chr2 (71-129)||(43041034-43041092)
chr2 (138-250)||(31903400-31903511)
chr2 (67-130)||(41252445-41252508)
chr2 (67-130)||(44104740-44104803)
chr2 (67-124)||(35793096-35793153)
chr2 (80-130)||(41642937-41642987)
chr2 (444-556)||(13415147-13415257)
chr2 (470-556)||(6728343-6728429)
chr2 (67-124)||(31903569-31903626)
chr2 (438-536)||(2208407-2208502)
chr2 (782-837)||(32644929-32644984)
chr2 (787-844)||(20683655-20683712)
chr2 (791-844)||(34929303-34929356)
chr2 (139-177)||(31296230-31296268)
chr2 (794-920)||(37028868-37028994)
chr2 (791-844)||(17696140-17696193)
chr2 (792-825)||(34504159-34504192)
[»] chr5 (34 HSPs)
chr5 (139-271)||(4695160-4695292)
chr5 (139-269)||(12398946-12399076)
chr5 (139-269)||(29875101-29875231)
chr5 (139-269)||(34208685-34208815)
chr5 (139-259)||(4145841-4145961)
chr5 (139-269)||(23090445-23090575)
chr5 (139-243)||(3077744-3077848)
chr5 (139-269)||(22645909-22646039)
chr5 (139-269)||(42757805-42757933)
chr5 (791-924)||(523625-523758)
chr5 (794-924)||(5736009-5736140)
chr5 (67-130)||(12399130-12399193)
chr5 (67-130)||(29874984-29875047)
chr5 (67-130)||(34208568-34208631)
chr5 (818-923)||(15472837-15472942)
chr5 (67-130)||(4695346-4695409)
chr5 (67-130)||(42757994-42758057)
chr5 (67-126)||(4145724-4145783)
chr5 (67-130)||(23090328-23090391)
chr5 (444-568)||(36255243-36255365)
chr5 (67-130)||(3077627-3077690)
chr5 (791-924)||(30210-30343)
chr5 (139-240)||(12096231-12096332)
chr5 (435-556)||(35836664-35836783)
chr5 (856-924)||(4400395-4400461)
chr5 (189-249)||(19574883-19574943)
chr5 (800-923)||(22874200-22874322)
chr5 (791-924)||(27555164-27555297)
chr5 (797-860)||(35563022-35563085)
chr5 (67-106)||(41610625-41610664)
chr5 (67-105)||(12096413-12096451)
chr5 (850-924)||(19521463-19521537)
chr5 (891-924)||(3328605-3328638)
chr5 (794-914)||(6988575-6988696)
[»] chr6 (25 HSPs)
chr6 (139-269)||(32274581-32274711)
chr6 (139-269)||(2543228-2543358)
chr6 (139-269)||(27312114-27312246)
chr6 (139-272)||(29452539-29452672)
chr6 (169-259)||(5008308-5008398)
chr6 (793-892)||(2588765-2588864)
chr6 (139-269)||(31170990-31171120)
chr6 (139-255)||(7156251-7156367)
chr6 (788-950)||(357136-357302)
chr6 (812-924)||(31954800-31954912)
chr6 (67-130)||(5003912-5003975)
chr6 (67-130)||(27312300-27312363)
chr6 (67-130)||(32274464-32274527)
chr6 (205-269)||(8504733-8504797)
chr6 (67-130)||(12174730-12174793)
chr6 (67-128)||(8504888-8504949)
chr6 (75-126)||(7156413-7156464)
chr6 (793-950)||(33565487-33565645)
chr6 (182-270)||(18742136-18742224)
chr6 (798-923)||(3768053-3768179)
chr6 (67-130)||(29452726-29452790)
chr6 (67-130)||(31171174-31171237)
chr6 (791-897)||(12622501-12622607)
chr6 (98-130)||(2543142-2543174)
chr6 (67-129)||(18741977-18742039)
[»] scaffold0103 (2 HSPs)
scaffold0103 (139-259)||(44767-44885)
scaffold0103 (69-130)||(44652-44713)
[»] scaffold0351 (1 HSPs)
scaffold0351 (444-568)||(13546-13668)
[»] scaffold0750 (1 HSPs)
scaffold0750 (444-544)||(5681-5779)
[»] scaffold0192 (1 HSPs)
scaffold0192 (791-923)||(13358-13490)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 567 - 1229
Target Start/End: Complemental strand, 30469050 - 30468386
Alignment:
Q  567 aatatcattttatttaactggatcttaaatcttaaaataaaaaatatatataattttacactttttccacataaaatattgcgtctctcctcatatgaaa 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| | ||||| |||||||| |||    
T  30469050 aatatcattttatttaactggatcttaaatcttaaaataaaaaataaatata-ttttacacttttttcacataaaatatcgtgtctcccctcatataaaa 30468952  T
Q  667 cccaaacacaaaatttaaaatttctttcatccattacttctcttaaaaaattcctcattttttcgagttgggatcctcttcatttgttctctcatccgtt 766  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  30468951 cccaaacacaaaatttaaaatttctctcatccattacttctcttaaaa--ttcctcatttttttgagttgggatcctcttcatttgttctctcatctgtt 30468854  T
Q  767 aggtcaaacatatctttaaattatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgt 866  Q
    |||||||||||||||||||||||||| ||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||||||||| | |    
T  30468853 aggtcaaacatatctttaaattatggtaaatgttaacttgtgccttaaaggcacaagtttagaaaccaaatatagaaacttaattttggaaattgtacat 30468754  T
Q  867 tcaatttgttgaaagtttaaaaagttatt-ttttcaatacaaaacttatgttttaattc-nnnnnnnagatccttaacttgtgcccaacattacccttaa 964  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||        ||||||||||| |||||||||||||||||||||    
T  30468753 tcaatttgttgaaagtttaaaaagttatttttttcaatacaaaacttatattttaattcttttttttagatccttaacctgtgcccaacattacccttaa 30468654  T
Q  965 attatatatcttccaaactaaaagttaaatgttactctatatatgtttgaaatatttcacaaaattaagtactttattaagagtccccattttatt---a 1061  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        
T  30468653 attatatatcttccaaactaaaagttaaatgttaccctatatatgtttgaaatatttcataaaattaagtactttattaagagtccccattttatttact 30468554  T
Q  1062 aatcccatactatatcaatcgtacatatatacaaaatggc-taatgctcaagcattagcgcatggcaatttcaannnnnnnnnnnnnnnncatttgactg 1160  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                |||||| |||    
T  30468553 aatcccatactataccaatcgtacatatatacaaaatggcttaatgctcaagcattagcgcatggcaatttcaa-tttttttttctttttcatttggctg 30468455  T
Q  1161 ttaaaagcaagaattacaatatgaatcactcacattctaagattagatgcaacatctaatggatgagaa 1229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30468454 ttaaaagcaagaattacaatatgaatcactcacattctaagattagatgcaacatctaatggatgagaa 30468386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 67 - 443
Target Start/End: Complemental strand, 30469415 - 30469035
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagggaatttattatcacatgtgaatttaataataaaca 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  30469415 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaaatgaatttattatcacatgtgaatttaatgataaaca 30469316  T
Q  167 aggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaatagaggga 266  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||  |||||    
T  30469315 atgacatttaagtaaaaaatacacaaatatttatatactttaattacttcttaaaacttgtgtcaagagttaaaacatcaaaagaaaagaaatgaaggga 30469216  T
Q  267 gtaatatggataaaggacagtgagat----tgaaatactttaaagtaagttgtctggtttatttgttagaaaggggaagaggtgagagggagaaggaaga 362  Q
    ||||||||||||||||||| ||||||    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469215 gtaatatggataaaggacaatgagatggaatgaaatattttaaagtaagttgtctggtttatttgttagaaaggggaagaggtgagagggagaaggaaga 30469116  T
Q  363 aagcaaaatctctcttatgctatttcacctccaagtaaggggaattagaaatgtatctgtagttaaatatcattttattta 443  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30469115 aaccaaaatctctcttatgctatttcacctccaagtaaggggaattagaaatgtatttgtagttaaatatcattttattta 30469035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 67 - 268
Target Start/End: Original strand, 39481933 - 39482138
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagggaa--ttta--ttatcacatgtgaatttaataata 162  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |   |  |||   ||||||||||||||||||||| ||    
T  39481933 ttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacctttggtttatcacatgtgaatttaatacta 39482032  T
Q  163 aacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaataga 262  Q
    || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  39482033 aataaggacattttagtcaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaagaaatgga 39482132  T
Q  263 gggagt 268  Q
    ||||||    
T  39482133 gggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 794 - 949
Target Start/End: Original strand, 37861163 - 37861318
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaaagtta 37861262  T
Q  894 ttttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgcc 949  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  37861263 ttttttcaatacaaaacttatgttttaattctttttttagatccttaacttgtgcc 37861318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 790 - 949
Target Start/End: Complemental strand, 46964013 - 46963854
Alignment:
Q  790 tgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaa 889  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  46964013 tgggaaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaaa 46963914  T
Q  890 gttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgcc 949  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  46963913 gttattttttcaatacaaaacttatgttttaattctttttttagatccttaacttgtgcc 46963854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 8955906 - 8955779
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8955906 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 8955807  T
Q  239 aaacaacaaaagaaaaggaatagaggga 266  Q
    ||||| ||||||||||||||| ||||||    
T  8955806 aaacatcaaaagaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 33288535 - 33288421
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaa-tacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33288535 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaatagct 33288436  T
Q  238 aaaacaacaaaagaa 252  Q
    |||||| ||||||||    
T  33288435 aaaacatcaaaagaa 33288421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 45590889 - 45591019
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||| |||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  45590889 ttatcacatatgaatttaatgataaataagaacatttaagtaaaaaacacacaaatgtttatatactttaattactccttacaacttatgtcaagagcta 45590988  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  45590989 aaacatcaaaagaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 36971195 - 36971315
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  36971195 ttatcacatgtgaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattacttcttaaaacttgtgtcaaaagcta 36971294  T
Q  239 aaacaacaaaagaaaaggaat 259  Q
    ||||| |||||||||| ||||    
T  36971295 aaacatcaaaagaaaatgaat 36971315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 789 - 915
Target Start/End: Complemental strand, 46362892 - 46362766
Alignment:
Q  789 atgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaa 888  Q
    ||||||||||||||||||||| |||||  |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||| | |||||||||| |||    
T  46362892 atgggaaatgttaacttgtgcccttaaagcacaagtttataaaacaactgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagttttaaa 46362793  T
Q  889 agttattttttcaatacaaaacttatg 915  Q
    |||||||||||||||||||||||||||    
T  46362792 agttattttttcaatacaaaacttatg 46362766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 791 - 923
Target Start/End: Original strand, 19399832 - 19399964
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||| ||||||||||| |||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||| | |||||| ||||||||     
T  19399832 gggaaatattaacttgtgcccttaagacacaagtttagtagccaaatatagaaacttatttttggaaattgtgcattcaatgtcttgaaaatttaaaaac 19399931  T
Q  891 ttattttttcaatacaaaacttatgttttaatt 923  Q
    ||||||||||||||||||| ||||| |||||||    
T  19399932 ttattttttcaatacaaaatttatgctttaatt 19399964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 50774188 - 50774084
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||| |||||||| ||||| |||   |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50774188 ttatcacatgtaaatttaatgataaataagattatttaagtaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 50774089  T
Q  239 aaaca 243  Q
    |||||    
T  50774088 aaaca 50774084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 34334479 - 34334617
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgt---ttatatactttaattactccttaaaacttgtgtcaagag 235  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||   |||||||||||||||||||||||| |||||||| |||||    
T  34334479 ttatcacatgtgaatttaatgataaataaagacatttaagtaaaaaacatacaaatgtttattatatactttaattactccttaagacttgtgttaagag 34334578  T
Q  236 ctaaaacaacaaaag-aaaaggaatagagggagtaatat 273  Q
     | || || |||||| ||||||||| |||||||||||||    
T  34334579 tttaatcatcaaaagaaaaaggaatggagggagtaatat 34334617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 49162249 - 49162365
Alignment:
Q  153 tttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaa 252  Q
    |||||| ||||| |||||||||| ||||||||  |||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||    
T  49162249 tttaatgataaataaggacattttagtaaaaatcacacaaatatttatatactttaattactctttaaaacttgtgccaatagctaaaacatcaaaagaa 49162348  T
Q  253 aaggaatagagggagta 269  Q
    | ||||| |||||||||    
T  49162349 agggaatggagggagta 49162365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 26025658 - 26025546
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||| | |||||| ||| ||||||||||||||||| ||| ||||||| |||||||||    
T  26025658 ttatcacatgtgaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatactttaattactccctaagacttgtgccaagagcta 26025559  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  26025558 aaacatcaaaaga 26025546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 18835854 - 18835969
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||||| |||||||| |||||||| |||||||||||||||||| |||||  || || ||    
T  18835854 ttatcacatgtgaatttaatgataaataaggacattttagttaaaaacacacaaatatttatatattttaattactccttaaaatttgtgcgaaaagata 18835953  T
Q  239 aaacaacaaaagaaaa 254  Q
    ||||| ||||| ||||    
T  18835954 aaacatcaaaataaaa 18835969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 33288652 - 33288589
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33288652 ttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 33288589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 49162134 - 49162194
Alignment:
Q  69 agaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49162134 agaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaa 49162194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 34334362 - 34334425
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34334362 ttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaag 34334425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 791 - 950
Target Start/End: Original strand, 16692071 - 16692230
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||||||  || |||  |||||||| |||||||||| |||||| || ||| ||| ||||| ||||||||| |||||| | ||||||  |||||||     
T  16692071 gggaaatgttactttatgcctttaagacataagtttagaagccaaatataaaaatttatttttgaaaattgtgcattcaatatcttgaaaagttaaaaat 16692170  T
Q  891 ttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    |||| ||||||||||||||||||||||||| |||       |||| ||||||||||||||    
T  16692171 ttatattttcaatacaaaacttatgttttatttctctttttagattcttaacttgtgccc 16692230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 8956023 - 8955960
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  8956023 ttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaag 8955960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 45590772 - 45590835
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  45590772 ttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaag 45590835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 791 - 950
Target Start/End: Original strand, 45891763 - 45891923
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||  ||||||| |  | ||||| ||||||| |||||| |  | ||| |||||||      
T  45891763 gggaaatgttaacttgtgctcttaaggcacaagttaagaaaccaaagttagaaacattttgttggagattgtgcattcaatgtcctaaaaatttaaaatc 45891862  T
Q  891 ttattttttc-aatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    |||||||||| || |||||| ||||| ||||||||       |||| ||||||||||||||    
T  45891863 ttattttttcaaagacaaaaattatgatttaattctatttttagattcttaacttgtgccc 45891923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18835735 - 18835799
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtga--atttattattgttttctcaa 129  Q
    ||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||    
T  18835735 ttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaa 18835799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 791 - 923
Target Start/End: Original strand, 30666829 - 30666960
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||||||||||||||| ||| || |||||||| |||||||||||||||||  ||  |||||||| |||||| |||||| | || ||||||  |||||    
T  30666829 gggaaatgttaacttgtgcccttgaggcacaagttaagaaaccaaatgtagaaggttttttttggaacttgtgcattcaatgtcttaaaagttgcaaaag 30666928  T
Q  891 ttattttttcaatacaaaacttatgttttaatt 923  Q
    ||||  || ||||| |||| |||| ||||||||    
T  30666929 ttatacttccaatataaaatttat-ttttaatt 30666960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 793 - 914
Target Start/End: Complemental strand, 51164683 - 51164562
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||||||| ||| || || ||||| |||||| |||||| |||| ||  | ||| ||| ||||| |||||| | || ||||||| |||||||    
T  51164683 gaaatgttaacttgtgcccttgaggcagaagttaagaaactaaatgtggaaattttttcttgaaaagtgtgcattcaatgtcttaaaagtttcaaaagtt 51164584  T
Q  893 attttttcaatacaaaacttat 914  Q
    |||||||||||| |||| ||||    
T  51164583 attttttcaatataaaatttat 51164562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 36968368 - 36968407
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttag 106  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36968368 ttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 794 - 924
Target Start/End: Complemental strand, 44540267 - 44540136
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||| ||||||| | | ||||||  |||||||||||| ||||| ||| ||| ||| |||| |||||||||| ||| || | ||||||  ||||||| |||    
T  44540267 aaatattaacttttccccttaaggaacaagtttagaagccaaacgtaaaaatttatttttagaaattgtgcattcgatgtcttgaaatgttaaaaactta 44540168  T
Q  894 t-tttttcaatacaaaacttatgttttaattc 924  Q
    | |||||||||| ||||||||| |||||||||    
T  44540167 tctttttcaatataaaacttatattttaattc 44540136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 786 - 924
Target Start/End: Original strand, 22318089 - 22318227
Alignment:
Q  786 attatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagttta 885  Q
    ||||||||||||||||| ||||||||||  | || ||||| || ||||||||||||||||||  ||||  || |||||| || |||   ||||||||||     
T  22318089 attatgggaaatgttaatttgtgctcttggggcataagttaaggaaccaaatgtagaaacttttttttaaaagttgtgcatttaatgctttgaaagtttc 22318188  T
Q  886 aaaagttattttttcaatacaaaacttatgttttaattc 924  Q
    |||||||||  ||| |||| |||| |||| | |||||||    
T  22318189 aaaagttatcatttaaatataaaatttatttgttaattc 22318227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 850 - 952
Target Start/End: Original strand, 2319172 - 2319274
Alignment:
Q  850 ttttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgcc 949  Q
    ||||| ||||||||| |||||| | ||||||  ||||||| ||||||||||||||||||||| ||  |||| |||       ||||||||||||||||||    
T  2319172 ttttgaaaattgtgcattcaatgttttgaaaagttaaaaacttattttttcaatacaaaactcataatttagttcttcttttagatccttaacttgtgcc 2319271  T
Q  950 caa 952  Q
    |||    
T  2319272 caa 2319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 821 - 924
Target Start/End: Original strand, 49014507 - 49014611
Alignment:
Q  821 aagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttc-aatacaaaacttatgtttt 919  Q
    ||||||| || |||||| || ||| |||||||||| |||||||| |||||| | || ||||||||| || | | |||||  |||||||||||||||||||    
T  49014507 aagtttaaaagccaaatataaaaatttaattttgggaattgtgcattcaatattttaaaagtttaacaattaaatttttataatacaaaacttatgtttt 49014606  T
Q  920 aattc 924  Q
    |||||    
T  49014607 aattc 49014611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 50774310 - 50774242
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatg-----ttttagtgaatttattattgttttctcaag 130  Q
    ||||||||| ||||||||| |||||||||||||      ||||||||||||||||||||||||||||||    
T  50774310 ttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaag 50774242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 17874383 - 17874450
Alignment:
Q  470 tatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaact-acttaaaacgaaac 536  Q
    |||||||||||| |||||  ||||||||||| ||| | ||||||||||| ||| ||||||||||||||    
T  17874383 tatattaacactgctaaagcagccctctcagcacatgatgtaccgaaaagactaacttaaaacgaaac 17874450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 31217068 - 31217013
Alignment:
Q  789 atgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    |||||||||| |||||||||| ||||||||||||||| | ||| ||||| ||||||    
T  31217068 atgggaaatgctaacttgtgcccttaagacacaagttaataaatcaaatatagaaa 31217013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 818 - 924
Target Start/End: Original strand, 6942424 - 6942530
Alignment:
Q  818 cacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgtt 917  Q
    |||||| | |||||| |||||||| || ||||||||||||||||||| |||    | || |||||||||||| |||| |||||||| | | | |||| ||    
T  6942424 cacaagataagaaactaaatgtagtaatttaattttggaaattgtgcattcttgatcttaaaagtttaaaaacttatcttttcaatgccacatttatttt 6942523  T
Q  918 ttaattc 924  Q
    |||||||    
T  6942524 ttaattc 6942530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 794 - 920
Target Start/End: Complemental strand, 13435522 - 13435396
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    ||||| ||||| |||| |||  |||| ||||| ||||||||||| || ||  ||  | |||||||||||   || ||||| || ||||||| |||| |||    
T  13435522 aaatgataactcgtgcccttgggacataagttaagaaaccaaatataaaagttttttcttggaaattgtatatttaatttcttaaaagttttaaaactta 13435423  T
Q  894 ttttttcaatacaaaacttatgtttta 920  Q
    | ||||||||||||||||||| |||||    
T  13435422 tgttttcaatacaaaacttatttttta 13435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 791 - 821
Target Start/End: Original strand, 26740738 - 26740768
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacaca 821  Q
    |||||||||||||||||||||||||||||||    
T  26740738 gggaaatgttaacttgtgctcttaagacaca 26740768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 1391466 - 1391499
Alignment:
Q  439 atttattttttaaacaagcaaaaatgaattatat 472  Q
    ||||||||||| ||||||||||||||||||||||    
T  1391466 atttattttttgaacaagcaaaaatgaattatat 1391499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 2e-71; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 1236277 - 1236071
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagggaa----tttatt-atcacatgtgaatttaataat 161  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||   |    || ||| |||||||||||||||||| ||    
T  1236277 ttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttaccctttgatttatcacatgtgaatttaatgat 1236178  T
Q  162 aaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaatag 261  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  1236177 aaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatgg 1236078  T
Q  262 agggagt 268  Q
    |||||||    
T  1236077 agggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 47669266 - 47669396
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47669266 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 47669365  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  47669366 aaacatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 46220406 - 46220536
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46220406 ttatcacatgtgaatttaatgataaataaggacaattaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 46220505  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  46220506 aaacatcaaaagaaaaggaatggagggagta 46220536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 9831650 - 9831777
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831650 ttatcacatgtgaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 9831749  T
Q  239 aaacaacaaaagaaaaggaatagaggga 266  Q
    ||||| ||||||||||||||| ||||||    
T  9831750 aaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 48564964 - 48565094
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |    
T  48564964 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagcca 48565063  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  48565064 aaacatcaaaagaaaaggaatggagggagta 48565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 10737831 - 10737701
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  10737831 ttatcacatctgaatttaatgataaataaggacatttaagtaaaaaacacacaaatatttatatactttaattgctccttaaaacttgtatcaagagcta 10737732  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  10737731 aaacatcaaaagaaaaggaatggagggagta 10737701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 3384725 - 3384597
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3384725 ttatcacatgtgaatttaatgataaataaaaacatttaagtaaaaaacacacaaacgtttatatactttaattactccttaaaacttgtgtcaagagcta 3384626  T
Q  239 aaacaacaaaagaaaaggaatagagggag 267  Q
    ||||| |||||||||| |||| |||||||    
T  3384625 aaacatcaaaagaaaaagaatggagggag 3384597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 8889589 - 8889720
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8889589 ttatcacatgtgaatttaatgataaataatgacatttaagtaaaaaaacacacaaatgtatatatactttaattacttcttaaaacttgtgtcaagagct 8889688  T
Q  238 aaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||| ||||| ||||||||| |||||||||    
T  8889689 aaaacatcaaaataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 4817416 - 4817520
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4817416 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaacacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagtta 4817515  T
Q  239 aaaca 243  Q
    |||||    
T  4817516 aaaca 4817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 4055631 - 4055746
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  4055631 ttatcacatgtgaatttaatgataaataaagacatttaagtgaaaaacacacaaatatttatatactttaattactccttaaaacttgtgtcaagagtta 4055730  T
Q  239 aaacaacaaaagaaaa 254  Q
    ||||| ||||||||||    
T  4055731 aaacatcaaaagaaaa 4055746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 18126997 - 18127112
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18126997 ttatcacatgtgaatttaatgataaaaaagaatatttaagtaaaacacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 18127096  T
Q  239 aaacaacaaaagaaaa 254  Q
    ||||| ||||| ||||    
T  18127097 aaacatcaaaaaaaaa 18127112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 792 - 924
Target Start/End: Original strand, 18919256 - 18919388
Alignment:
Q  792 ggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagt 891  Q
    |||||||||||||||||| |||||| |||||||||| || ||||||||||||||||| ||||| ||||||||| |||||| | ||||||| ||||||| |    
T  18919256 ggaaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaaggttaaaaatt 18919355  T
Q  892 tattttttcaatacaaaacttatgttttaattc 924  Q
    ||| |||||||||||||| || |||||||||||    
T  18919356 tatattttcaatacaaaagttttgttttaattc 18919388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 794 - 924
Target Start/End: Original strand, 34462722 - 34462852
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||| ||| ||||| ||||||||| |||||| | ||||||| || |||| |||    
T  34462722 aaatgttaacttgtgcccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggttgaaaactta 34462821  T
Q  894 ttttttcaatacaaaacttatgttttaattc 924  Q
    | |||||||||||||| ||||||||||||||    
T  34462822 tattttcaatacaaaagttatgttttaattc 34462852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 39241299 - 39241431
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| | ||||  || ||||| |||||||| ||||||||||||||||||| ||||||| || ||||||||||||    
T  39241299 ttatcacatgtgaatttaatgataaataagaatattttggtcaaaaacacacaaatatttatatactttaattacttcttaaaatttatgtcaagagcta 39241398  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaat 271  Q
    ||||| ||||||||||| ||| ||| |||||||    
T  39241399 aaacatcaaaagaaaagaaatggagagagtaat 39241431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 8889472 - 8889535
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8889472 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 8889535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 434 - 556
Target Start/End: Original strand, 38225631 - 38225751
Alignment:
Q  434 attttatttattttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacga 533  Q
    ||||| ||| |||||| |||||||||||||| ||||||  |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  38225631 atttttttttttttttgaacaagcaaaaatggattata--ttaacactgctaaaatagccctttcagcacaaggtgtaccgaaaaaactacttaacacga 38225728  T
Q  534 aactagcaatttacaagattaca 556  Q
    |||   || ||||||||||||||    
T  38225729 aacacacagtttacaagattaca 38225751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 4055514 - 4055577
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4055514 ttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaag 4055577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 4817299 - 4817362
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4817299 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaag 4817362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 10737948 - 10737885
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10737948 ttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaag 10737885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 18126881 - 18126944
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18126881 ttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaag 18126944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 787 - 914
Target Start/End: Original strand, 37705306 - 37705433
Alignment:
Q  787 ttatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaa 886  Q
    ||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||| ||||||  ||||  ||| |||||| | ||||||| ||||    
T  37705306 ttatgggaaatgttaacttgtgtccttaagacacaagtttagaagtcaaatgtagaaactaaattttaaaaataatgcattcaatgttttgaaagattaa 37705405  T
Q  887 aaagttattttttcaatacaaaacttat 914  Q
    ||  |||||||| |||||||||| ||||    
T  37705406 aatcttatttttccaatacaaaatttat 37705433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 46220289 - 46220352
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46220289 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 46220352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 794 - 908
Target Start/End: Complemental strand, 1640332 - 1640218
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    ||||| |||||||| | || ||| |||||||||||||   ||||||||||||||||||||  ||||||||| |||||| | ||||||||||||||| |||    
T  1640332 aaatggtaacttgtaccctaaaggcacaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaagtttaaaaactta 1640233  T
Q  894 ttttttcaatacaaa 908  Q
    |||||||||||||||    
T  1640232 ttttttcaatacaaa 1640218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 792 - 924
Target Start/End: Complemental strand, 40619663 - 40619532
Alignment:
Q  792 ggaaatgttaacttgtgctcttaagacacaagtttagaaa--ccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaa 889  Q
    ||||||| |||||||||| ||||| |||||||   | |||  ||||||||| ||||||||||||| ||||||||| |||||| | || ||||||||||||    
T  40619663 ggaaatgctaacttgtgcccttaaaacacaag---acaaatgccaaatgtaaaaacttaattttgaaaattgtgcattcaatatcttaaaagtttaaaaa 40619567  T
Q  890 gttattttttcaatacaaaacttatgttttaattc 924  Q
     ||||||||| ||||||||| ||||||||||||||    
T  40619566 tttatttttttaatacaaaaattatgttttaattc 40619532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 47669149 - 47669212
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  47669149 ttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaag 47669212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 48564851 - 48564910
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48564851 aacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaag 48564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 37875854 - 37875727
Alignment:
Q  141 atcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaa 240  Q
    |||| ||||||||||||| ||||| ||||| |||| ||| ||||  | |||||| ||| ||||| ||||||| ||||||| ||||||| |||||||||||    
T  37875854 atcaaatgtgaatttaatgataaataaggatattttagtcaaaac-atacaaatatttctatacattaattattccttaagacttgtgccaagagctaaa 37875756  T
Q  241 acaacaaaagaaaaggaatagagggagta 269  Q
    ||| ||||||||||| ||| |||||||||    
T  37875755 acatcaaaagaaaagaaatggagggagta 37875727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 9831533 - 9831596
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  9831533 ttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaag 9831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 793 - 924
Target Start/End: Complemental strand, 47853654 - 47853520
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||||||| | |||  |||||||||| ||   ||||||||| |||||||||| |||||||||| |  ||| | ||||||||||||||| ||    
T  47853654 gaaatgttaacttgtgcccataatgcacaagtttataagtaaaatgtagagacttaattttagaaattgtgcatataatgttttgaaagtttaaaaattt 47853555  T
Q  893 a-ttttttcaat--acaaaacttatgttttaattc 924  Q
    | ||||||||||  |||||||||||||||||||||    
T  47853554 atttttttcaatacacaaaacttatgttttaattc 47853520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 7414354 - 7414436
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaa 220  Q
    |||||| ||||||||||||| ||||| ||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  7414354 ttatcatatgtgaatttaatgataaataaggatatttaagtaaaaaaacacacaaatatttatatactttaattactccttaa 7414436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 7414237 - 7414300
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||    
T  7414237 ttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaag 7414300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 3384827 - 3384779
Alignment:
Q  82 tattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3384827 tatttcaaaacttttgatgttttagtgaatttattattgttttctcaag 3384779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 794 - 920
Target Start/End: Complemental strand, 8301838 - 8301712
Alignment:
Q  794 aaatgttaacttg-tgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||| |||| |||||||||||||| | ||| |||||||||||||||||||||  ||||||||| ||||||      |||| ||||||||||    
T  8301838 aaatgttaacttgctgct-ttaagacacaagttaaaaaatcaaatgtagaaacttaattttaaaaattgtgcattcaataatcgtaaaggttaaaaagtt 8301740  T
Q  893 attttttcaatacaaaacttatgtttta 920  Q
    || ||||||||| |||  ||||||||||    
T  8301739 atattttcaatagaaagtttatgtttta 8301712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 5598139 - 5598039
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| |||||||| |  ||||||||||||| |||||  ||||| ||||| ||||| ||||||||||| |||||||||||||| || |||| |    
T  5598139 tttttttaacaaacaaaaatgga--atatattaacactgctaaagcagccccctcagcacaagatgtaccgaaaagactacttaaaacgatacaagcagt 5598042  T
Q  544 tta 546  Q
    |||    
T  5598041 tta 5598039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 470 - 556
Target Start/End: Original strand, 28381451 - 28381537
Alignment:
Q  470 tatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaatttacaagattaca 556  Q
    |||||||||| | |||||  ||||||||||| ||||| ||||||||||| |||||| |||||||||| |||| || |||| ||||||    
T  28381451 tatattaacattgctaaagcagccctctcagcacaagatgtaccgaaaagactactaaaaacgaaacaagcagttcacaaaattaca 28381537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 1749570 - 1749521
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttatt 116  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  1749570 ttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 827 - 924
Target Start/End: Complemental strand, 24439242 - 24439145
Alignment:
Q  827 agaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattc 924  Q
    |||||| ||||||| ||| ||||||||| ||||||||| ||||   | || |||||||||||| ||||||||| ||||||| | |||| |||||||||    
T  24439242 agaaactaaatgtaaaaatttaattttgaaaattgtgcattcataatcttaaaagtttaaaaacttatttttttaatacaatatttattttttaattc 24439145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 791 - 923
Target Start/End: Original strand, 5327737 - 5327869
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||||||||||||||  ||| | ||||||||||  |||||||  || ||||||  | || |||||||||| |||||| | || ||||||| |||      
T  5327737 gggaaatgttaacttgtgccattagggcacaagtttaagaaccaaacataaaaactttttatttgaaattgtgcattcaatatattaaaagtttgaaatt 5327836  T
Q  891 ttattttttcaatacaaaacttatgttttaatt 923  Q
    |||| |||||||||||||| |||  ||||||||    
T  5327837 ttatcttttcaatacaaaagttactttttaatt 5327869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 39241188 - 39241236
Alignment:
Q  74 ttcaactatattccaaaacttttgatgttttagtgaatttattattgtt 122  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  39241188 ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgtt 39241236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 794 - 844
Target Start/End: Original strand, 5327636 - 5327686
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    |||||||||||||||| |||||| ||||||||||||| | |||||||||||    
T  5327636 aaatgttaacttgtgcccttaaggcacaagtttagaagctaaatgtagaaa 5327686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 26842587 - 26842673
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaactt 225  Q
    |||||||||||||||||||| ||||| ||||| |||| |||  |||| | | | || ||| ||||||||||||||||||||| ||||    
T  26842587 ttatcacatgtgaatttaatcataaataaggatattttagtctaaaacatatacatatttctatactttaattactccttaagactt 26842673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 49112400 - 49112318
Alignment:
Q  143 cacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaactt 225  Q
    |||||||||||||||| ||||| ||||| |||| |||  |||| | |||||| ||| |||||||||||||||| |||| ||||    
T  49112400 cacatgtgaatttaatcataaataaggatattttagtccaaaacatacaaatatttttatactttaattactctttaagactt 49112318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 904
Target Start/End: Original strand, 37209790 - 37209903
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||| || ||||||| || | | |||| ||| |||||||||||||||||  ||  | ||||||||||||| || ||| | || ||||||| |||||    
T  37209790 gggaaatgctatcttgtgccctaagggcacaggttaagaaaccaaatgtagaagttttttcttggaaattgtgcatttaatatcttaaaagtttcaaaag 37209889  T
Q  891 ttattttttcaata 904  Q
    |||| |||||||||    
T  37209890 ttatcttttcaata 37209903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 817 - 950
Target Start/End: Original strand, 51540702 - 51540836
Alignment:
Q  817 acacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaat-ttgttgaaagtttaaaaagttattttttcaatacaaaacttatg 915  Q
    ||||||||| |||| |||||| ||||||| |||| ||||||||||||  |||| | || |  |||||||||||  ||||||| | ||  |||||||||||    
T  51540702 acacaagttaagaagccaaatatagaaacataatcttggaaattgtgtattcattattttaaaaagtttaaaattttattttgttaagtcaaaacttatg 51540801  T
Q  916 ttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    |||||||||       ||||| |||||||||||||    
T  51540802 ttttaattccatttttagatcattaacttgtgccc 51540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 791 - 843
Target Start/End: Original strand, 30058348 - 30058400
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaa 843  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||    
T  30058348 gggaaatgttaacttgtgctcttgagacataagttaaggaaccaaaagtagaa 30058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 797 - 869
Target Start/End: Original strand, 36438340 - 36438412
Alignment:
Q  797 tgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttca 869  Q
    ||||||||||||| || | | |||||| | |||||| ||||||||||||||||| ||||||||| ||| ||||    
T  36438340 tgttaacttgtgccctaagggcacaagataagaaactaaatgtagaaacttaatcttggaaattttgcattca 36438412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 782 - 825
Target Start/End: Original strand, 3150624 - 3150667
Alignment:
Q  782 ttaaattatgggaaatgttaacttgtgctcttaagacacaagtt 825  Q
    |||||||| || |||||||||| |||||||||||||||||||||    
T  3150624 ttaaattaaggaaaatgttaacctgtgctcttaagacacaagtt 3150667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 797 - 871
Target Start/End: Original strand, 1607324 - 1607398
Alignment:
Q  797 tgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaat 871  Q
    ||||||||||||| |||| | |||||  | |||||| ||||||||||| |||| |||| ||||||||| ||||||    
T  1607324 tgttaacttgtgcccttagggcacaatataagaaactaaatgtagaaatttaactttgaaaattgtgcattcaat 1607398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 26842469 - 26842527
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttc 125  Q
    ||||||||||||||||||| |||||  ||||||||||||||  ||||| |||| |||||    
T  26842469 ttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatatttttttc 26842527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 794 - 923
Target Start/End: Complemental strand, 31501191 - 31501062
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaat-ttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||||||||| ||| | |||||| | ||| ||||  ||||||| || | ||||||||||||| || ||| || | |||| |||||||  ||    
T  31501191 aaatgttaacttgtgctctcaaggcgcaagttaaaaaatcaaagatagaaacatattgttggaaattgtgcatttaatgttctagaaa-tttaaaatctt 31501093  T
Q  893 attttttcaatacaaaacttatgttttaatt 923  Q
    || ||||||| |||||| ||||| |||||||    
T  31501092 atcttttcaaaacaaaaattatgatttaatt 31501062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 852 - 914
Target Start/End: Complemental strand, 38081687 - 38081625
Alignment:
Q  852 ttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttat 914  Q
    ||||||||||||| |||||| | || ||||||| ||||||||| ||||||||| |||| ||||    
T  38081687 ttggaaattgtgcattcaatgtcttaaaagtttcaaaagttatcttttcaatataaaatttat 38081625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 844
Target Start/End: Original strand, 19234793 - 19234846
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    ||||||||||||||||||| |||  | || ||||| ||||||||||||||||||    
T  19234793 gggaaatgttaacttgtgcccttgcggcataagttaagaaaccaaatgtagaaa 19234846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 46220292 - 46220259
Alignment:
Q  236 ctaaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||||| |||||||||||||||||||||||||    
T  46220292 ctaaaacatcaaaagaaaaggaatagagggagta 46220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 1e-59; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 9332391 - 9332598
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagggaa---tttatt-atcacatgtgaatttaataata 162  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |   |   || ||| ||||||||||||||||||| ||    
T  9332391 ttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacctttgatttatcacatgtgaatttaatacta 9332490  T
Q  163 aacaaggacatttaagtaaaa-aatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaatag 261  Q
    || |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |    
T  9332491 aataaggacattttagtaaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgttaagagctaaaatatcaaaagaaaagaaatgg 9332590  T
Q  262 agggagta 269  Q
    ||||||||    
T  9332591 agggagta 9332598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 6387822 - 6387692
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387822 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 6387723  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||| ||||    
T  6387722 aaacatcaaaagaaaaggaatggaggaagta 6387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 17904310 - 17904440
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904310 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 17904409  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  17904410 aaacatcaaaagaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 29890956 - 29890826
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  29890956 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagcta 29890857  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  29890856 aaacatcaaaagaaaaggaatggagggagta 29890826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 8e-49
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 37179462 - 37179331
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  37179462 ttatcacatgtgaatttaatgataaacaaggacatttaagtaaaaaaacacacaaatgtctatatactttcattactccttaaaacttgtgtcaagagct 37179363  T
Q  238 aaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||| ||||||||||||||| |||||||||    
T  37179362 aaaacatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 46467465 - 46467335
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  46467465 ttatcacatgtgaatttaatgataaataagaacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaatttgtgtcaagagtta 46467366  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  46467365 aaacatcaaaagaaaaggaatggagggagta 46467335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 26770326 - 26770456
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  26770326 ttatcacatgtgaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagaatta 26770425  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  26770426 aaacatcaaaagaaaatgaatggagggagta 26770456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 29427294 - 29427162
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29427294 ttatcacatgtgaatttaatgataaataaagacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagaggta 29427195  T
Q  239 aaacaacaaaagaaaaggaat--agagggagta 269  Q
    ||||| |||||||||| ||||  ||||||||||    
T  29427194 aaacatcaaaagaaaatgaatggagagggagta 29427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 4405256 - 4405386
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||  |||||||| |||||||| |||||||||||||||||||||||| ||| |||||    
T  4405256 ttatcacatgtgaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagcta 4405355  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  4405356 aaacatcaaaagaaaaggaatggagggagta 4405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 31502784 - 31502653
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacaca--aatgtttatatactttaattactccttaaaacttgtgtcaagagc 236  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||  ||||||||    
T  31502784 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgcatcaagagc 31502685  T
Q  237 taaaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||||| |||||||||| |||| |||||||||    
T  31502684 taaaacatcaaaagaaaa-gaatggagggagta 31502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 41921984 - 41921892
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaa 232  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41921984 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaa-acacaaatgtttatatactttaattactccttaaaacttgtgtcaa 41921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 6389887 - 6390001
Alignment:
Q  155 taataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaa 254  Q
    |||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||||    
T  6389887 taatgataaataaggacatttaagtaaaaaacacacaaatatttatatactttaactacttcttaaaacttgtgtcaagagttaaaacatcaaaagaaaa 6389986  T
Q  255 ggaatagagggagta 269  Q
     |||| |||||||||    
T  6389987 agaattgagggagta 6390001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 818 - 924
Target Start/End: Complemental strand, 47375919 - 47375814
Alignment:
Q  818 cacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgtt 917  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| | ||||||| |||||||||||| ||||||||||||||||||||||    
T  47375919 cacaagtttagaatccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttgaaagattaaaaagttat-ttttcaatacaaaacttatgtt 47375821  T
Q  918 ttaattc 924  Q
    |||||||    
T  47375820 ttaattc 47375814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 9876410 - 9876542
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||  |||||||| |||||||| ||||||||||||||||||||| || ||| |||||    
T  9876410 ttatcacatgtgaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttatgccaatagcta 9876509  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaata 272  Q
    |||| | |||| |||| |||| |||| |||||||    
T  9876510 aaac-ataaaaaaaaaagaatggaggaagtaata 9876542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 6389762 - 6389825
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6389762 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 6389825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 17904193 - 17904256
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904193 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 17904256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 29427411 - 29427348
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29427411 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 29427348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 46467582 - 46467519
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46467582 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 46467519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 48049149 - 48049261
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||| |||||||| ||||| |||||||||| ||| ||||| | |||||| ||| ||||||||||||||| ||||| ||||||| |||||||||    
T  48049149 ttatcacatgtaaatttaatcataaataaggacattttagtcaaaaacatacaaatatttctatactttaattactacttaagacttgtgccaagagcta 48049248  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  48049249 aaacatcaaaaga 48049261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 26770209 - 26770272
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26770209 ttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaag 26770272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 31503184 - 31503125
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503184 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 31503125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 37179578 - 37179519
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179578 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 37179519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 9876297 - 9876355
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9876297 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 9876355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 800 - 924
Target Start/End: Complemental strand, 12879822 - 12879697
Alignment:
Q  800 taacttgtgctcttaagacacaagtttagaaaccaaatgtagaaactt-aattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttt 898  Q
    |||||||| | |||||||||||||||| |||   ||||||||||| || ||| ||||||||||||| || ||| | |||||||||||| || ||||||||    
T  12879822 taacttgtacccttaagacacaagtttggaagttaaatgtagaaaatttaatcttggaaattgtgcatttaatgtcttgaaagtttaacaatttattttt 12879723  T
Q  899 tcaatacaaaacttatgttttaattc 924  Q
    | ||||||||||||||||||||||||    
T  12879722 ttaatacaaaacttatgttttaattc 12879697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 31858222 - 31858110
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||| |||||||| ||||| ||||| |||| | | ||||| | |||||||||||||| ||||||||||||||||| | |||||||||||| ||    
T  31858222 ttatcacatgtaaatttaatcataaataaggatattttaatcaaaaacatacaaatgtttatattctttaattactccttaagatttgtgtcaagagtta 31858123  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  31858122 aaacatcaaaaga 31858110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19523942 - 19523879
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  19523942 ttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaag 19523879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 41922101 - 41922038
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  41922101 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaag 41922038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 470 - 568
Target Start/End: Complemental strand, 45166210 - 45166113
Alignment:
Q  470 tatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaatttacaagattacaccaaaatgttaa 568  Q
    |||||||||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||  ||| ||||||||| |||| |||||||||||    
T  45166210 tatattaacattgctaaaatagccctttcagcacaaggtttaccgaaaaaactacttaaaacgaaacacgcagtttacaaga-tacaacaaaatgttaa 45166113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 5514926 - 5515038
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| |||||| |||| |||| | |||||| ||| |||| |||||||| || |||| |||||||||||||||||    
T  5514926 ttatcacatgtgaatttaatcataaataagaacattttagtacaaaacatacaaatatttttatattttaattattcattaagacttgtgtcaagagcta 5515025  T
Q  239 aaacaacaaaaga 251  Q
    | ||| |||||||    
T  5515026 atacatcaaaaga 5515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 12252219 - 12252331
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||| | |||||| ||| ||||| ||||||||||||||| ||||||| |||| | ||    
T  12252219 ttatcacatgtgaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatacattaattactccttaagacttgtgccaagtgtta 12252318  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  12252319 aaacatcaaaaga 12252331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 6387939 - 6387876
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  6387939 ttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaag 6387876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 29891069 - 29891010
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  29891069 aacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaag 29891010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 4405143 - 4405201
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4405143 aacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaa 4405201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 9215592 - 9215463
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||  |||||||||| |||  |||| | |||||| ||||| ||||||||||||| ||||| | ||||  |||||||||    
T  9215592 ttatcacatgtgaatttaattataat-aaggacattttagtccaaaacatacaaatatttatgtactttaattacttcttaagatttgtaccaagagcta 9215494  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||| ||  |||||||||||||    
T  9215493 aaacatcaaaagataaaaaatagagggagta 9215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 46690014 - 46690140
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||     ||||||| |||  |||| | |||||| ||||||||||||||||||||||||| | ||||| |||||||||    
T  46690014 ttatcacatgtgaatttaattataat----gacattttagtccaaaacatacaaatatttatatactttaattactccttaagatttgtgccaagagcta 46690109  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||| ||  ||| |||||||||    
T  46690110 aaacatcaaaagataaaaaatggagggagta 46690140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 446 - 536
Target Start/End: Original strand, 39693938 - 39694026
Alignment:
Q  446 ttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaac 536  Q
    |||| |||||||||||||| |  ||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||  |||||||    
T  39693938 ttttgaacaagcaaaaatgga--atatattaacactgcttaaatagccctttcagcacaaggtgtaccgaaaaaactacttagcacgaaac 39694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 19523863 - 19523813
Alignment:
Q  199 atatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19523863 atatactttaattactccttaaaacttgtgtcaagagctaaaacatcaaaa 19523813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 794 - 923
Target Start/End: Complemental strand, 21212816 - 21212687
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||||||||||| ||| |||||| |||||||||| |   |||||||| ||||||| ||||| ||||| | | |||||| | ||||||  ||||||| |||    
T  21212816 aaatgttaacttatgcccttaaggcacaagtttaaatgtcaaatgtaaaaacttatttttgaaaattatacattcaatgttttgaaaagttaaaaactta 21212717  T
Q  894 ttttttcaatacaaaacttatgttttaatt 923  Q
    |||||||||||||| | ||| |||||||||    
T  21212716 ttttttcaatacaatatttacgttttaatt 21212687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 821 - 950
Target Start/End: Complemental strand, 16831718 - 16831589
Alignment:
Q  821 aagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgtttta 920  Q
    |||| ||||| | ||||||| ||| ||| |||| |||||||||| |||||| | ||||||  ||||||| |||| |||||||||||||||||||||||||    
T  16831718 aagtatagaagctaaatgtaaaaatttatttttagaaattgtgcattcaatatcttgaaaagttaaaaacttatattttcaatacaaaacttatgtttta 16831619  T
Q  921 attcnnnnnnnagatccttaacttgtgccc 950  Q
     |||       | |||||||||||||||||    
T  16831618 tttctatttttacatccttaacttgtgccc 16831589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 33974641 - 33974753
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||||| |||||| ||||| ||||| |||| |||  || | | || ||| ||| ||||||||||||||||||||| ||||||| |||||||||    
T  33974641 ttatcacatgtgagtttaatcataaataaggatattttagtccaatacataccaatatttctatactttaattactccttaagacttgtgccaagagcta 33974740  T
Q  239 aaacaacaaaaga 251  Q
    ||||  |||||||    
T  33974741 aaacgtcaaaaga 33974753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 793 - 924
Target Start/End: Original strand, 30003743 - 30003873
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||| ||| ||| ||| |||| ||||| |  || ||||||||| ||| ||||||||||| ||  |||||| | || |||  ||||||| ||    
T  30003743 gaaatgttaacttatgc-ctttagatacaaatttagtagtcatatgtagaaatttatttttggaaattatgtattcaatatcttaaaaagttaaaaactt 30003841  T
Q  893 attttttcaatacaaaacttatgttttaattc 924  Q
    ||||||||||||||||| ||||||||||||||    
T  30003842 attttttcaatacaaaatttatgttttaattc 30003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 22753198 - 22753068
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| || ||||||| |||  |||| |  ||||| ||| ||| ||| |||||||| |||| ||||||||| ||| |||    
T  22753198 ttatcacatgtgaatttaatgataaataaagacattttagtccaaaacattcaaatatttttatgcttcaattactcattaagacttgtgtccagaacta 22753099  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||| | ||| ||| |||||||||    
T  22753098 aaacatcaaaatataagaaatggagggagta 22753068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 822 - 920
Target Start/End: Original strand, 39511188 - 39511286
Alignment:
Q  822 agtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgtttta 920  Q
    ||||||||| ||| ||||| ||||||| |||| |||||||||| |||||| | ||||||  || |||| |||| |||| ||||||||||||||||||||    
T  39511188 agtttagaagccagatgtaaaaacttatttttagaaattgtgcattcaatgtcttgaaaagttgaaaatttatatttttaatacaaaacttatgtttta 39511286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 791 - 844
Target Start/End: Complemental strand, 43952039 - 43951986
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    |||||||||||||||||| | |||||||||||||||||||  ||||||||||||    
T  43952039 gggaaatgttaacttgtgattttaagacacaagtttagaagacaaatgtagaaa 43951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 791 - 918
Target Start/End: Original strand, 38850486 - 38850612
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||| |||||||||| ||  ||| || ||| | |||||||  |||||||||||| || || ||  ||||||||| |||||| | |||||||||||||||     
T  38850486 gggatatgttaacttatgtccttgaggcacgaatttagaagtcaaatgtagaaattttatgttaaaaattgtgcattcaatgttttgaaagtttaaaaac 38850585  T
Q  891 ttattttttcaatacaaaacttatgttt 918  Q
    ||||||||| |||| |||| ||||||||    
T  38850586 ttatttttt-aatataaaaattatgttt 38850612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 790 - 924
Target Start/End: Complemental strand, 46277094 - 46276962
Alignment:
Q  790 tgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaa 889  Q
    ||||||||||||| ||||||||||  | ||||||||||||||| |||   | ||||||  ||||||||||||| | || ||| | || ||||||| |||     
T  46277094 tgggaaatgttaatttgtgctcttggggcacaagtttagaaactaaa--cataaacttttttttggaaattgtacatttaatatattaaaagtttgaaat 46276997  T
Q  890 gttattttttcaatacaaaacttatgttttaattc 924  Q
     || | |||||||||||||| |||| |||||||||    
T  46276996 tttgtcttttcaatacaaaagttattttttaattc 46276962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 7839253 - 7839315
Alignment:
Q  189 acaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaaga 251  Q
    |||||| ||||||||||||||||||||||||| |||||||  || |||||||| | |||||||    
T  7839253 acaaatatttatatactttaattactccttaatacttgtgataacagctaaaatatcaaaaga 7839315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 799 - 871
Target Start/End: Complemental strand, 42244545 - 42244473
Alignment:
Q  799 ttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaat 871  Q
    |||||||||||  ||||  |||||||||||||   ||||||||||||||| ||||||||||||| | ||||||    
T  42244545 ttaacttgtgcctttaacgcacaagtttagaatttaaatgtagaaacttatttttggaaattgtacattcaat 42244473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 788 - 864
Target Start/End: Original strand, 46603691 - 46603767
Alignment:
Q  788 tatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgc 864  Q
    ||||||||||| |||||||||| |||||| || ||||| |||||| |||  |||||||||  | |||||||||||||    
T  46603691 tatgggaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgc 46603767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 42964804 - 42964704
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| |||||||| |||||||  ||||||| |||||  ||||| ||||| ||||| ||||||||||| | || ||||||||| || |||| |    
T  42964804 ttttttgaacaaacaaaaatggattatat--taacactgctaaagcagccccctcagcacaagatgtaccgaaaagaatatttaaaacgatacaagcagt 42964707  T
Q  544 tta 546  Q
    |||    
T  42964706 tta 42964704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 29722985 - 29723023
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgtttta 105  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  29722985 ttagaacttaaactttattccaaaacttttgatgtttta 29723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 2e-58; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 45334406 - 45334275
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45334406 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 45334307  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaa 270  Q
    ||||| ||||||||||||||| ||||||||||    
T  45334306 aaacatcaaaagaaaaggaatggagggagtaa 45334275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 33837859 - 33837729
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33837859 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 33837760  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  33837759 aaacatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 2508926 - 2508792
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2508926 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 2508827  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaatat 273  Q
    ||||| ||||||||||| ||| || ||||||||||    
T  2508826 aaacatcaaaagaaaagaaattgatggagtaatat 2508792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 25106358 - 25106492
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  25106358 ttatcacatgtgaatttaatgataaataaggaaatttaaataaaaaacacacaagtgtttatatactttaattactccttaaaacttgtgtcaaaagcta 25106457  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaatat 273  Q
    ||||| ||||||||||||||| |||||||||||||    
T  25106458 aaacatcaaaagaaaaggaatggagggagtaatat 25106492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 28379094 - 28379225
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||| |||||||||||||  ||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28379094 ttatcgcatgtgaatttaaggataaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaatcactccttaaaacttgtgtcaagagcta 28379193  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaa 270  Q
    ||||| ||||||||||||||| ||||||||||    
T  28379194 aaacatcaaaagaaaaggaatggagggagtaa 28379225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 38495602 - 38495472
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38495602 ttatcacatgtgaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatattttaattactccttaaaacttatgtcaagagcta 38495503  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  38495502 aaacatcaaaagaaaatgaatggagggagta 38495472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 9740132 - 9740263
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaata-cacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  9740132 ttatcacatgtgaatttaatgataaataatgacatttaagtaaaaaaaaacacaaatgtttatatactttaattactccctaaaacttgtgtcaagagtt 9740231  T
Q  238 aaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||| ||||||||||||||| |||||||||    
T  9740232 aaaacatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 13469637 - 13469508
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  13469637 ttatcacatgtgaatttaatgataaataaggacatttaaggaaaaac-acacaaatatttatatactttaattactccttaaaacttgtgtcaagagtta 13469539  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| || ||||||    
T  13469538 aaacatcaaaagaaaaggaatggaaggagta 13469508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 2626368 - 2626253
Alignment:
Q  139 ttatcacatgtgaa-tttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||| |||||| ||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626368 ttatcacatgtgaaatttaatgataaataaggacatttaaataaaaac-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 2626270  T
Q  238 aaaacaacaaaagaaaa 254  Q
    |||||| ||||||||||    
T  2626269 aaaacatcaaaagaaaa 2626253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 444 - 568
Target Start/End: Complemental strand, 4311510 - 4311388
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| |||||||| |||||||  ||||||| ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| |||| |    
T  4311510 ttttttgaacaatcaaaaatggattatat--taacactgctaaaatagccctttcagcacaaggtgtatcgaaaagactacttaaaacgaaacaagcagt 4311413  T
Q  544 ttacaagattacaccaaaatgttaa 568  Q
    ||||||||||||| |||||||||||    
T  4311412 ttacaagattacaacaaaatgttaa 4311388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 444 - 568
Target Start/End: Complemental strand, 8565333 - 8565211
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| |||||||||||||| |||||||  ||||||||| ||||||||||| |||| ||||| |||||||||||||||||| ||||||| || |||| |    
T  8565333 tttttttaacaagcaaaaatggattatat--taacacttcaaaaatagccctttcagcacaagatgtaccgaaaaaactactaaaaacgagaccagcagt 8565236  T
Q  544 ttacaagattacaccaaaatgttaa 568  Q
    ||||| ||||||| |||||||||||    
T  8565235 ttacacgattacaacaaaatgttaa 8565211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 28378977 - 28379040
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28378977 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 28379040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 791 - 950
Target Start/End: Original strand, 7042570 - 7042729
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||||||||||||||| || ||| ||||||||||||||  || |||||||||||| |||||||||  |||| || ||| | ||||||  |||||||     
T  7042570 gggaaatgttaacttgtgccctcaaggcacaagtttagaaattaattgtagaaacttatttttggaaaacgtgcattaaatgttttgaaaaattaaaaac 7042669  T
Q  891 ttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    ||||||||||||||||||||| ||| ||||||||       | |||||||||||||||||    
T  7042670 ttattttttcaatacaaaactcatgatttaattcttcttttaaatccttaacttgtgccc 7042729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 32183611 - 32183481
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||| | |||||| ||| ||| ||||||||||||||||| ||||||| |||||||||    
T  32183611 ttatcacatgtgaatttaatcataaataaggacattttagtccaaaacatacaaatatttctatgctttaattactccttaagacttgtgccaagagcta 32183512  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||| ||  ||| |||||||||    
T  32183511 aaacatcaaaagataaaaaatggagggagta 32183481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 2509043 - 2508980
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2509043 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 2508980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 33837976 - 33837913
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33837976 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 33837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 444 - 556
Target Start/End: Complemental strand, 39298149 - 39298039
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| ||||||||||||||||  ||||||| |||||  ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| |    
T  39298149 tttttttaacaaacaaaaatgaattatat--taacactgctaaagcagccctctcagcacaagatgtaccgaaaagactacttaaaacgaaacaagcagt 39298052  T
Q  544 ttacaagattaca 556  Q
    |||||| ||||||    
T  39298051 ttacaaaattaca 39298039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 27793438 - 27793375
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27793438 ttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaag 27793375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 842 - 924
Target Start/End: Complemental strand, 114221 - 114139
Alignment:
Q  842 aaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattc 924  Q
    |||||||||||||||| | || | |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  114221 aaacttaattttggaagtcgtacattcaatgttttgaaagtttaaaaatttattttttcaatacaaaacttatgttttaattc 114139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 811 - 923
Target Start/End: Complemental strand, 43108763 - 43108652
Alignment:
Q  811 cttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaac 910  Q
    ||||||| |||||||||||| || ||| || ||||||||||||| ||||||||| || ||| | ||||||||||||||| ||| |||||||||||||||     
T  43108763 cttaagatacaagtttagaagccgaatataaaaacttaattttgaaaattgtgcatttaatatcttgaaagtttaaaaactta-tttttcaatacaaaat 43108665  T
Q  911 ttatgttttaatt 923  Q
    |||| ||||||||    
T  43108664 ttatattttaatt 43108652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 13469752 - 13469689
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  13469752 ttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaag 13469689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 25106241 - 25106304
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  25106241 ttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaag 25106304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 38495719 - 38495656
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||    
T  38495719 ttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaag 38495656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 45334523 - 45334460
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  45334523 ttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaag 45334460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 27793172 - 27793070
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||| |||||||| ||||| ||||| |||||| |||||| |||||||||||| |||||| ||||||| |||||||||||| |||| |||| ||    
T  27793172 ttatcacatgtaaatttaatgataaataaggatatttaaataaaaa-tacacaaatgtt-atatacattaattattccttaaaacttatgtccagaggta 27793075  T
Q  239 aaaca 243  Q
    |||||    
T  27793074 aaaca 27793070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 811 - 923
Target Start/End: Original strand, 7637593 - 7637705
Alignment:
Q  811 cttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaac 910  Q
    |||||| |||||||||||||  |||||||||||  ||  ||||| ||||||||| |||||| | ||||||  ||| ||| ||||||||||||||||||||    
T  7637593 cttaaggcacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaaagttacaaacttattttttcaatacaaaac 7637692  T
Q  911 ttatgttttaatt 923  Q
    || |||| |||||    
T  7637693 ttgtgttctaatt 7637705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 791 - 923
Target Start/End: Complemental strand, 18181850 - 18181718
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||| |||||||||| |||||| || || ||||  | ||||||||||||||||  ||||| ||||||||| |||||| | || |||  |||||||     
T  18181850 gggaaatgctaacttgtgcccttaaggcataaatttaatagccaaatgtagaaacttgtttttgaaaattgtgcattcaatgtcttaaaaaattaaaaac 18181751  T
Q  891 ttattttttcaatacaaaacttatgttttaatt 923  Q
    ||||||||| |||| |||| ||||| |||||||    
T  18181750 ttattttttaaatataaaatttatgctttaatt 18181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 9740015 - 9740078
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||  |||||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  9740015 ttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaag 9740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 2626472 - 2626422
Alignment:
Q  81 atattccaaaacttttgatgttttagtgaatttatta-ttgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaag 2626422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 788 - 950
Target Start/End: Original strand, 8059895 - 8060057
Alignment:
Q  788 tatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaa 887  Q
    ||||| |||||||||||||||| ||| || || ||||| |||||||||||||||||  ||    ||||||||||||| |||||| | || ||||| | ||    
T  8059895 tatggaaaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgtagaagtttttgcttggaaattgtgcattcaatgtcttaaaagtctcaa 8059994  T
Q  888 aagttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    |||||||   || |||| ||||||||| ||||| |||       || ||||||||||||||||    
T  8059995 aagttataaatttaatataaaacttattttttatttccattttaagctccttaacttgtgccc 8060057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 32183729 - 32183666
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||  ||||||||||||||  ||||| |||| ||||| ||||    
T  32183729 ttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaag 32183666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 2626699 - 2626667
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgat 99  Q
    |||||||||||||||||||||||||||||||||    
T  2626699 ttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 793 - 844
Target Start/End: Original strand, 6108728 - 6108779
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    ||||||||||||||||| ||||| ||||||||||||||  ||||| ||||||    
T  6108728 gaaatgttaacttgtgcccttaaaacacaagtttagaaggcaaatatagaaa 6108779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 4993402 - 4993357
Alignment:
Q  780 ctttaaattatgggaaatgttaacttgtgctcttaagacacaagtt 825  Q
    |||||| |||||||||||||||| ||||||||||||| || |||||    
T  4993402 ctttaatttatgggaaatgttaatttgtgctcttaaggcataagtt 4993357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 8e-58; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 41349501 - 41349371
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349501 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 41349402  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  41349401 aaacatcaaaagaaaaggaatggagggagta 41349371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 1352126 - 1351996
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1352126 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 1352027  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  1352026 aaacatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 39528896 - 39529026
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39528896 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaaaagcta 39528995  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  39528996 aaacatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 18997114 - 18997246
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997114 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 18997213  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaat 271  Q
    ||||| ||||||||||||||| |||||||||||    
T  18997214 aaacatcaaaagaaaaggaatggagggagtaat 18997246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 18999653 - 18999785
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18999653 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacgcacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 18999752  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaat 271  Q
    ||||| ||||||||||||||| |||||||||||    
T  18999753 aaacatcaaaagaaaaggaatggagggagtaat 18999785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 29014820 - 29014685
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29014820 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattacttcttaaaacttgtgtcaagagcta 29014721  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaatatg 274  Q
    ||||| ||||||||||||||| ||||||||| ||||    
T  29014720 aaacatcaaaagaaaaggaatggagggagtattatg 29014685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 32677607 - 32677477
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677607 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 32677508  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  32677507 aaacatcaaaagaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 39518554 - 39518684
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39518554 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactcattaaaacttgtgtcaagagcta 39518653  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  39518654 aaacatcaaaagaaaaggaatggagggagta 39518684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 29371668 - 29371538
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29371668 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaatttgtgtcaagagcta 29371569  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  29371568 aaacatcaaaagaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 36737964 - 36737834
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36737964 ttatcacatgtgaatttaatgataaataaggatatttaagtaaaaaacacacaaatgtttatatactttaattattccttaaaacttgtgtcaagagcta 36737865  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  36737864 aaacatcaaaagaaaaggaatggagggagta 36737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 39807109 - 39806979
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39807109 ttatcacatgtgaatttaatgataaataagaacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 39807010  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||||||||  ||||||||    
T  39807009 aaacatcaaaagaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 32840095 - 32840226
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32840095 ttatcacatgtgaatttaatgataaataagaacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 32840194  T
Q  238 aaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||| | |||||||||| |||| |||||||||    
T  32840195 aaaatatcaaaagaaaatgaatggagggagta 32840226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 22157405 - 22157534
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22157405 ttatcacatgtgaatttaatactaaataaggacattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 22157504  T
Q  239 aaacaacaaaagaaaaggaatagagggagt 268  Q
    ||||| ||||||||||  ||| ||||||||    
T  22157505 aaacatcaaaagaaaataaatggagggagt 22157534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 38855464 - 38855594
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||  |||||||| |||||||| |||||||||||||||||||||||| ||| |||||    
T  38855464 ttatcacatgtgaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagcta 38855563  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  38855564 aaacatcaaaagaaaaggaatggagggagta 38855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 21974296 - 21974425
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||||||||||||| |||| ||||| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  21974296 ttatcacatgtgaatttaatactaaataaggatattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagtta 21974395  T
Q  239 aaacaacaaaagaaaaggaatagagggagt 268  Q
    ||||| ||||||||||  ||| ||||||||    
T  21974396 aaacatcaaaagaaaataaatggagggagt 21974425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 21996727 - 21996856
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||||||||||||| |||| ||||| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  21996727 ttatcacatgtgaatttaatactaaataaggatattttagtcaaaaatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagtta 21996826  T
Q  239 aaacaacaaaagaaaaggaatagagggagt 268  Q
    ||||| ||||||||||  ||| ||||||||    
T  21996827 aaacatcaaaagaaaataaatggagggagt 21996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 55367714 - 55367801
Alignment:
Q  154 ttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaa 241  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  55367714 ttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtatcaagagctaaaa 55367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 28228583 - 28228701
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactt---taattactccttaaaacttgtgtcaagag 235  Q
    |||||||||||||||||||| ||||| | || ||||||||||||||| ||||||||||||||||||||   |||||||| ||||||||||||||||||||    
T  28228583 ttatcacatgtgaatttaatgataaaaatgg-catttaagtaaaaaacacacaaatgtttatatactttaataattacttcttaaaacttgtgtcaagag 28228681  T
Q  236 ctaaaacaacaaaagaaaag 255  Q
    | |||||| ||||| |||||    
T  28228682 ccaaaacatcaaaaaaaaag 28228701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 18996997 - 18997060
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18996997 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 18997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 18999536 - 18999599
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18999536 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 18999599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 28228466 - 28228529
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228466 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 28228529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 29014937 - 29014874
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29014937 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 29014874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 29371785 - 29371722
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29371785 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 29371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 1352243 - 1352180
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1352243 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 1352180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 32677724 - 32677661
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32677724 ttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaag 32677661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 39528779 - 39528842
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39528779 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 39528842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 439 - 568
Target Start/End: Complemental strand, 19982346 - 19982219
Alignment:
Q  439 atttattttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaacta 538  Q
    |||| ||||||  ||||||||||||| |||||||  ||||| | ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||      
T  19982346 attttttttttttacaagcaaaaatggattatat--taacattgctaaaatagccctttcaacacaaggagtaccgaaaaaactacttaaaacgaaacac 19982249  T
Q  539 gcaatttacaagattacaccaaaatgttaa 568  Q
    | | |||||||||||||| |||||||||||    
T  19982248 gtagtttacaagattacaacaaaatgttaa 19982219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 21974179 - 21974240
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21974179 ttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 21974240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 21996610 - 21996671
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21996610 ttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 21996671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 39807226 - 39807163
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  39807226 ttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaag 39807163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 41349618 - 41349555
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  41349618 ttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaag 41349555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 38855355 - 38855409
Alignment:
Q  75 tcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38855355 tcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 38855409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 22157288 - 22157349
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 128  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  22157288 ttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctca 22157349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 36738081 - 36738018
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36738081 ttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaag 36738018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 39518441 - 39518500
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  39518441 aacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaag 39518500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 55365938 - 55366001
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  55365938 ttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaag 55366001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 49040974 - 49040862
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||| ||||||||||||| |||||||||||||||| |||  |||| | |||||| ||| ||||  |||||||||||| || ||||||| || ||||||    
T  49040974 ttatcaaatgtgaatttaatcataaacaaggacattttagtctaaaacatacaaatatttctataacttaattactcctcaagacttgtgccaggagcta 49040875  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  49040874 aaacatcaaaaga 49040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 791 - 920
Target Start/End: Complemental strand, 50170633 - 50170503
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaatt-ttggaaattgtgcgttcaatttgttgaaagtttaaaaa 889  Q
    ||||||||||||||||||| |||  | || ||||| |||||||||||||||||  ||  || ||||||||||||| |||||| | || ||| ||| ||||    
T  50170633 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtagaagtttttttcttggaaattgtgcattcaatgtcttaaaaatttcaaaa 50170534  T
Q  890 gttattttttcaatacaaaacttatgtttta 920  Q
    ||||| ||||||||| |||| |||| |||||    
T  50170533 gttatcttttcaatataaaatttatttttta 50170503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 840730 - 840849
Alignment:
Q  150 gaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaa 249  Q
    |||||||||  |||| |||||||||| |||  |||| | |||||| ||| ||||||||||||| | ||||| ||||||| |||||| ||||||| |||||    
T  840730 gaatttaatcctaaataaggacattttagtccaaaacatacaaatttttctatactttaattatttcttaagacttgtgccaagagttaaaacatcaaaa 840829  T
Q  250 gaaaaggaatagagggagta 269  Q
    || ||  ||| |||||||||    
T  840830 gataaaaaatggagggagta 840849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 788 - 844
Target Start/End: Original strand, 32733588 - 32733644
Alignment:
Q  788 tatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    ||||| ||||||||| |||||| ||||||||||||||||| || |||||||||||||    
T  32733588 tatggaaaatgttaatttgtgcccttaagacacaagtttataagccaaatgtagaaa 32733644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 444 - 533
Target Start/End: Original strand, 6985368 - 6985455
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacga 533  Q
    |||||| ||||| |||||||| |  ||||||||||||| |||||  ||||| ||||  ||||| ||||||||||| ||||||||||||||    
T  6985368 tttttttaacaaacaaaaatgga--atatattaacactgctaaagcagcccactcaacacaagatgtaccgaaaagactacttaaaacga 6985455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 832 - 924
Target Start/End: Complemental strand, 45318306 - 45318213
Alignment:
Q  832 ccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttatt-ttttcaatacaaaacttatgttttaattc 924  Q
    |||||| ||||||| || ||||  ||||||||| |||| | | ||||||||||||||| || || |||| ||||||||| ||||||||||||||    
T  45318306 ccaaatatagaaacatagttttaaaaattgtgcattcattattttgaaagtttaaaaactttttgtttttaatacaaaaattatgttttaattc 45318213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 796 - 924
Target Start/End: Original strand, 50129033 - 50129162
Alignment:
Q  796 atgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttatt 895  Q
    |||||||||||||| |||  | || |||||||||||| |||  ||||||| |  ||||| ||||||||| |||||| | || ||||||| |||  ||||     
T  50129033 atgttaacttgtgcccttggggcataagtttagaaactaaacatagaaacctttttttgaaaattgtgcattcaatatattaaaagtttgaaattttatc 50129132  T
Q  896 ttttcaat-acaaaacttatgttttaattc 924  Q
    |||||||| |||||| |||| |||||||||    
T  50129133 ttttcaataacaaaagttattttttaattc 50129162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 791 - 923
Target Start/End: Complemental strand, 4127536 - 4127404
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||||||||||||||| |||| | |||||||||| |||  |||  |||||||||  | |||| |||||| | |||| ||  || |||||||||||      
T  4127536 gggaaatgttaacttgtgcccttagggcacaagtttaaaaattaaacatagaaactttttcttgggaattgtacattcatttcattaaaagtttaaaatt 4127437  T
Q  891 ttattttttcaatacaaaacttatgttttaatt 923  Q
    |||| |||||||| ||||| | || ||||||||    
T  4127436 ttatattttcaatgcaaaagtgattttttaatt 4127404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 32839979 - 32840037
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 126  Q
    |||||||||||||||||||  |||  |||||||||||||||||| |||||||| ||||||    
T  32839979 ttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttct 32840037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 850 - 946
Target Start/End: Complemental strand, 39625181 - 39625085
Alignment:
Q  850 ttttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgt 946  Q
    ||||| ||||||||| || ||| | ||||||  ||||||  ||||||||| ||||||||| ||||||||||||||       |||||||||||||||    
T  39625181 ttttgaaaattgtgcatttaatgtcttgaaaagttaaaatcttattttttgaatacaaaatttatgttttaattctttttttagatccttaacttgt 39625085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 3e-57; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 15233902 - 15234035
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15233902 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatatacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 15234001  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaata 272  Q
    ||||| ||||||||||||||| ||||||||||||    
T  15234002 aaacatcaaaagaaaaggaatggagggagtaata 15234035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 41252562 - 41252693
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41252562 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 41252661  T
Q  238 aaaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||| |||||||||| |||| ||| |||||    
T  41252662 aaaacatcaaaagaaaatgaatggagagagta 41252693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 44104677 - 44104542
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||| || |    
T  44104677 ttatcacatgtgaatttaatgataaataaagacatttaagtaaaaaaacacacaaatgtttatatactttaattactccttaaaacttatgtcaaaagtt 44104578  T
Q  238 aaaacaacaaaagaaaaggaatagagggagtaatat 273  Q
    |||||| ||||||||||||||| |||||||||||||    
T  44104577 aaaacatcaaaagaaaaggaatggagggagtaatat 44104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 791 - 950
Target Start/End: Original strand, 5577964 - 5578123
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||||||| |||||  |||||| |||||||||||||||||||||| |||| ||||||||||||||||||| || ||| | |||||||||||||||     
T  5577964 gggaaatgttaatttgtgtccttaaggcacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaagtttaaaaac 5578063  T
Q  891 ttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||||||||||    
T  5578064 ttattttttcaatacaaaatttatgttttaattctctttttagatccttaacttgtgccc 5578123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 35793037 - 35792917
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||| |||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  35793037 ttatcgcatgtgaatttaatgataaatcaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttatgtcaagagtta 35792938  T
Q  239 aaacaacaaaagaaaaggaat 259  Q
    ||||| |||||||||||||||    
T  35792937 aaacatcaaaagaaaaggaat 35792917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 43040979 - 43040849
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||  |||||||| |||||||| |||||||||||||||||||||||| ||| |||||    
T  43040979 ttatcacatgtgaatttaatgataaataaggacattttagtaaaaatcacacaaatatttatatattttaattactccttaaaacttgtgccaatagcta 43040880  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  43040879 aaacatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 800 - 924
Target Start/End: Original strand, 20556752 - 20556875
Alignment:
Q  800 taacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttatttttt 899  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| | |||||| ||| |||| |||||||||    
T  20556752 taacttgtgcttttaagacacaagtttagaaactaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaaattt-aaaacttatttttt 20556850  T
Q  900 caatacaaaacttatgttttaattc 924  Q
    |||||||||||||||||||||||||    
T  20556851 caatacaaaacttatgttttaattc 20556875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 791 - 924
Target Start/End: Complemental strand, 26009740 - 26009606
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgt-tgaaagtttaaaaa 889  Q
    |||||||| |||||||||| |||||| ||||||||||||| | |||||||||||  ||||||||||||| |||| |||||| | | ||||||||||||||    
T  26009740 gggaaatgctaacttgtgcccttaaggcacaagtttagaagctaaatgtagaaatataattttggaaatcgtgcattcaatgtctctgaaagtttaaaaa 26009641  T
Q  890 gttattttttcaatacaaaacttatgttttaattc 924  Q
     |||||||| |||||||||||||||||||||||||    
T  26009640 cttatttttccaatacaaaacttatgttttaattc 26009606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 790 - 949
Target Start/End: Original strand, 35977285 - 35977444
Alignment:
Q  790 tgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaa 889  Q
    ||||||||||||| ||||||| |||||  ||||||||| ||| | |||||| |||||||||||| |||||| ||| |||||| | |||||| ||||||||    
T  35977285 tgggaaatgttaatttgtgcttttaagttacaagtttaaaaatcgaatgtaaaaacttaattttagaaattatgcattcaatgtcttgaaaatttaaaaa 35977384  T
Q  890 gttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgcc 949  Q
    ||||||||||||||| ||||||||| |||||||||       ||||||||||||||||||    
T  35977385 gttattttttcaatataaaacttatattttaattctttttttagatccttaacttgtgcc 35977444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 794 - 924
Target Start/End: Original strand, 34074123 - 34074253
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    ||||| |||||||||| || || ||||||||||||||   ||||||||||| || ||||||||||| |||| |||||| | ||||||||||||||  |||    
T  34074123 aaatgctaacttgtgccctcaaaacacaagtttagaagttaaatgtagaaatttcattttggaaatcgtgcattcaatgttttgaaagtttaaaagctta 34074222  T
Q  894 ttttttcaatacaaaacttatgttttaattc 924  Q
    |||||||||||||||||||||||||||||||    
T  34074223 ttttttcaatacaaaacttatgttttaattc 34074253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 21727819 - 21727931
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| |||||||||||||||| |||  |||| | |||||| ||||||||||| ||||||||||||| ||||||| |||||||||    
T  21727819 ttatcacatgtgaatttaatcataaacaaggacattttagtccaaaacatacaaatatttatatacttcaattactccttaagacttgtgccaagagcta 21727918  T
Q  239 aaacaacaaaaga 251  Q
    ||||| |||||||    
T  21727919 aaacatcaaaaga 21727931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 41643041 - 41643156
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||||| |||||||| ||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||| ||||||  |||| |||||  ||    
T  41643041 ttatcacatgttaatttaatgataaataaggacattttagtaaaaaacacacaaatatttatatactttaattactctttaaaatgtgtgccaagaatta 41643140  T
Q  239 aaacaacaaaagaaaa 254  Q
    ||||| ||||||||||    
T  41643141 aaacatcaaaagaaaa 41643156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 15233785 - 15233848
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15233785 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 15233848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 31296113 - 31296175
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31296113 ttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaa 31296175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 43041092 - 43041034
Alignment:
Q  71 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43041092 aacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 43041034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 31903511 - 31903400
Alignment:
Q  138 attatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 237  Q
    ||||||||||||||||||||| ||||| ||||||||||  || ||||| |||||||| || |||||||||||||||||||||||| | ||| ||| ||||    
T  31903511 attatcacatgtgaatttaatgataaataaggacattttggtcaaaaacacacaaatatt-atatactttaattactccttaaaagtcgtgccaaaagct 31903413  T
Q  238 aaaacaacaaaag 250  Q
    |||||| ||||||    
T  31903412 aaaacatcaaaag 31903400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 41252445 - 41252508
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41252445 ttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaag 41252508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 44104803 - 44104740
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  44104803 ttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaag 44104740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 35793153 - 35793096
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgtttt 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35793153 ttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt 35793096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 41642937 - 41642987
Alignment:
Q  80 tatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41642937 tatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 41642987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 444 - 556
Target Start/End: Original strand, 13415147 - 13415257
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| |||||||| ||||||  |||||||| |||||  ||||||||||| ||||| ||||||||||| |||||||||||||| || |||| |    
T  13415147 ttttttgaacaaacaaaaatggattata--ttaacactactaaagcagccctctcagcacaagatgtaccgaaaagactacttaaaacgatacaagcagt 13415244  T
Q  544 ttacaagattaca 556  Q
    ||| || ||||||    
T  13415245 ttaaaaaattaca 13415257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 470 - 556
Target Start/End: Complemental strand, 6728429 - 6728343
Alignment:
Q  470 tatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaatttacaagattaca 556  Q
    |||||||||||| |||||  |||||| |||| | ||| ||||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  6728429 tatattaacactgctaaagcagccctttcagcataagatgtaccgaaaagactacttaaaacgaaacaagcagtttacaaaattaca 6728343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 31903626 - 31903569
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgtttt 124  Q
    |||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||    
T  31903626 ttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgtttt 31903569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 438 - 536
Target Start/End: Complemental strand, 2208502 - 2208407
Alignment:
Q  438 tatttattttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaac 536  Q
    ||||| |||||| |||||||||||||| |  ||||||||||||| || |||||||||| |||| | |||||||||||| |||||||||||  |||||||    
T  2208502 tatttttttttttaacaagcaaaaatgga--atatattaacactgcttaaatagccctttcagcataaggtgtaccga-aaaactacttagcacgaaac 2208407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 782 - 837
Target Start/End: Complemental strand, 32644984 - 32644929
Alignment:
Q  782 ttaaattatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaat 837  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||| ||||||    
T  32644984 ttaaattaagggaaatgttaacttgtgcctttaagacacaagtttagaagccaaat 32644929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 787 - 844
Target Start/End: Complemental strand, 20683712 - 20683655
Alignment:
Q  787 ttatgggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  20683712 ttatggaaaatgttaacttgtgcccttaagatacaagtttagaagacaaatgtagaaa 20683655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 791 - 844
Target Start/End: Complemental strand, 34929356 - 34929303
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    ||||||||||||||||||| |||||| |||||||||| || |||||||||||||    
T  34929356 gggaaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaa 34929303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 31296230 - 31296268
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaa 177  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  31296230 ttatcacatgtgaatttaatgataaataaggacatttaa 31296268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 794 - 920
Target Start/End: Original strand, 37028868 - 37028994
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||||||||||||||| ||||||||| ||||| || || |||||||||||  ||   |||||||||||||  |||||| | || ||| | | ||||| ||    
T  37028868 aaatgttaacttgtgcccttaagacataagttaagtaatcaaatgtagaagtttttatttggaaattgtgtattcaatgtcttaaaaatctcaaaagata 37028967  T
Q  894 ttttttcaatacaaaacttatgtttta 920  Q
    |  ||| |||| ||||||||| |||||    
T  37028968 taattttaatataaaacttatttttta 37028994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 844
Target Start/End: Complemental strand, 17696193 - 17696140
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaa 844  Q
    ||||||||||||||||||| ||||||  |||||||||||| ||| || ||||||    
T  17696193 gggaaatgttaacttgtgcccttaaggtacaagtttagaagccacatatagaaa 17696140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 792 - 825
Target Start/End: Original strand, 34504159 - 34504192
Alignment:
Q  792 ggaaatgttaacttgtgctcttaagacacaagtt 825  Q
    |||||||||||||||||| |||||||||||||||    
T  34504159 ggaaatgttaacttgtgcccttaagacacaagtt 34504192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 1e-56; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 4695292 - 4695160
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4695292 ttatcacatgtgaatttaataataaataaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 4695193  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaat 271  Q
     |||| ||||||||||| ||| |||||||||||    
T  4695192 taacatcaaaagaaaagaaatggagggagtaat 4695160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 12399076 - 12398946
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12399076 ttatcacatgtgaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 12398977  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  12398976 aaacatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 29875101 - 29875231
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29875101 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaacacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 29875200  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  29875201 aaacatcaaaagaaaaggaatggagggagta 29875231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 34208685 - 34208815
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34208685 ttatcatatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 34208784  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||| ||||||||| |||||||||    
T  34208785 aaacatcaaaaaaaaaggaatggagggagta 34208815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 4145841 - 4145961
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  4145841 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagaacta 4145940  T
Q  239 aaacaacaaaagaaaaggaat 259  Q
    ||||| |||||||||||||||    
T  4145941 aaacatcaaaagaaaaggaat 4145961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 23090445 - 23090575
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  23090445 ttatcatatgtgaatttaatgataaataagaacatttaagtaaaaaatacacaaatgtttgtatactttaattactccttaaaacttgtgtcaagaggta 23090544  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  23090545 aaacatcaaaagaaaaggaatggagggagta 23090575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 3077744 - 3077848
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3077744 ttatcacatatgaatttaatgataaataaggacatttaagtaaaaaatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 3077843  T
Q  239 aaaca 243  Q
    |||||    
T  3077844 aaaca 3077848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 22646039 - 22645909
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  22646039 ttatcacatgtgaatttaatgataaataaggatattttagtaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgccaagagcta 22645940  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    |||||  |||||||||| ||| |||||||||    
T  22645939 aaacattaaaagaaaagaaattgagggagta 22645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 42757933 - 42757805
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||  |||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  42757933 ttatcacatgtgaatttaatgataaataaaaacatttaagtaaaaac-acacaac-gtttatatactttaattactccttaaaacttgtgtcaagagcta 42757836  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| ||||||||||||||| |||||||||    
T  42757835 aaacatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 791 - 924
Target Start/End: Original strand, 523625 - 523758
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||| || ||| ||| ||||| ||||||||| || ||| | ||||||| |||||||     
T  523625 gggaaatgttaacttgtgcccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaaggttaaaaat 523724  T
Q  891 ttattttttcaatacaaaacttatgttttaattc 924  Q
    |||| |||||||||||||| ||||||||||||||    
T  523725 ttatattttcaatacaaaagttatgttttaattc 523758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 794 - 924
Target Start/End: Complemental strand, 5736140 - 5736009
Alignment:
Q  794 aaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta 893  Q
    |||||||||||||||| ||||||| |||||||||| | ||||||||||||||||| ||||||||||||||| |||||| | || |||  ||||||| |||    
T  5736140 aaatgttaacttgtgcccttaagatacaagtttagtagccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttcaaaagttaaaaactta 5736041  T
Q  894 -ttttttcaatacaaaacttatgttttaattc 924  Q
     ||||||||||| ||||  |||||||||||||    
T  5736040 tttttttcaataaaaaatctatgttttaattc 5736009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 12399193 - 12399130
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12399193 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 12399130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 29874984 - 29875047
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29874984 ttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaag 29875047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 34208568 - 34208631
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34208568 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 34208631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 818 - 923
Target Start/End: Original strand, 15472837 - 15472942
Alignment:
Q  818 cacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgtt 917  Q
    |||||||||||||   ||||||||||||||| ||||||||||||||| |||||| | || |||  ||||||| |||||||||||||||||||||||| ||    
T  15472837 cacaagtttagaagttaaatgtagaaacttatttttggaaattgtgcattcaatatctttaaaaattaaaaacttattttttcaatacaaaacttatatt 15472936  T
Q  918 ttaatt 923  Q
    ||||||    
T  15472937 ttaatt 15472942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 4695409 - 4695346
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  4695409 ttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaag 4695346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 42758057 - 42757994
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  42758057 ttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaag 42757994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 4145724 - 4145783
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 126  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4145724 ttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttct 4145783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 23090328 - 23090391
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  23090328 ttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaag 23090391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 444 - 568
Target Start/End: Original strand, 36255243 - 36255365
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| |||||||||||||| ||||||  |||||||| |  | |||||||| |||| ||||||||||||||||| ||||||||||||||| | | || |    
T  36255243 tttttttaacaagcaaaaatggattata--ttaacactgcacatatagccctttcagcacaaggtgtaccgaaaagactacttaaaacgaaccaaacagt 36255340  T
Q  544 ttacaagattacaccaaaatgttaa 568  Q
    |||||| |||||| ||||| |||||    
T  36255341 ttacaaaattacaacaaaaagttaa 36255365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 3077627 - 3077690
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  3077627 ttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaag 3077690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 791 - 924
Target Start/End: Original strand, 30210 - 30343
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    |||||||| |||| ||| |  ||||| || ||||| |||| ||||||||||||| | ||||||| ||||||| | |||||| | ||||||| ||||| |     
T  30210 gggaaatgctaacatgtaccattaaggcataagttaagaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaaggttaaacac 30309  T
Q  891 ttattttttcaatacaaaacttatgttttaattc 924  Q
    ||  |||||||||||||||||||| |||||||||    
T  30310 tttatttttcaatacaaaacttatattttaattc 30343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 12096332 - 12096231
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||| ||||||||| ||||| |||||||||| |||  | || | ||||||  ||||||  ||||||||||||||||  ||||||||||||||||    
T  12096332 ttatcacatgcgaatttaattataaagaaggacattttagtccataagatacaaatacttatatgatttaattactccttaagtcttgtgtcaagagcta 12096233  T
Q  239 aa 240  Q
    ||    
T  12096232 aa 12096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 435 - 556
Target Start/End: Original strand, 35836664 - 35836783
Alignment:
Q  435 ttttatttattttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaa 534  Q
    |||| ||| |||||| ||||| |||||||||||||||  |||||||| ||| |  || |||||||| ||||| ||||||||||| |||||| |||||| |    
T  35836664 ttttttttttttttttaacaaacaaaaatgaattata--ttaacactgctatagcagtcctctcagcacaagatgtaccgaaaagactactaaaaacgga 35836761  T
Q  535 actagcaatttacaagattaca 556  Q
    || |||| || |||| ||||||    
T  35836762 acaagcatttcacaaaattaca 35836783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 856 - 924
Target Start/End: Original strand, 4400395 - 4400461
Alignment:
Q  856 aaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattc 924  Q
    ||||||| |||||||| | |||||| |||||||| |||||||||||||  |||||||||||||||||||    
T  4400395 aaattgtacgttcaatattttgaaaatttaaaaatttattttttcaat--aaaacttatgttttaattc 4400461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 19574883 - 19574943
Alignment:
Q  189 acaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaa 249  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||||| ||||||| |||||    
T  19574883 acaaatatttatatactttaattacttcttaagacttgtgccaagagttaaaacatcaaaa 19574943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 800 - 923
Target Start/End: Original strand, 22874200 - 22874322
Alignment:
Q  800 taacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttatttttt 899  Q
    ||||||||||| ||||| || ||||| |||| | | ||||||||  || |||||| ||||||||| |||||||| || ||| ||| ||||||||| ||||    
T  22874200 taacttgtgcttttaaggcataagttaagaagctatatgtagaagttttattttgaaaattgtgcattcaattttttaaaaatttcaaaagttatatttt 22874299  T
Q  900 caatacaaaacttatgttttaatt 923  Q
     |||| |||| |||| ||||||||    
T  22874300 taatataaaatttat-ttttaatt 22874322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 791 - 924
Target Start/End: Original strand, 27555164 - 27555297
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaatt--ttggaaattgtgcgttcaatttgttgaaagtttaaaa 888  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||  ||||||  |||||  ||| ||||||||| |||||| | || ||| |||||||    
T  27555164 gggaaatgttaacttgtgc-ctcaagacacaagtttagaagccaaacatagaaa--taatttcttgaaaattgtgcattcaatgtattaaaattttaaaa 27555260  T
Q  889 agttattttttc-aatacaaaacttatgttttaattc 924  Q
      | |||||||| ||||||||| ||||  ||||||||    
T  27555261 tttaattttttcaaatacaaaagttatagtttaattc 27555297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 797 - 860
Target Start/End: Original strand, 35563022 - 35563085
Alignment:
Q  797 tgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaatt 860  Q
    ||||||||||||| || | |||||||| | |||||| ||||||||||||||||  |||||||||    
T  35563022 tgttaacttgtgccctaaggacacaagataagaaactaaatgtagaaacttaaccttggaaatt 35563085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 41610664 - 41610625
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttag 106  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  41610664 ttagaacttaaactttattccaaaacttttgatgttttag 41610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 12096451 - 12096413
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgtttta 105  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  12096451 ttaggacttcaactatattccaaaacatttgatgtttta 12096413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 850 - 924
Target Start/End: Original strand, 19521463 - 19521537
Alignment:
Q  850 ttttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaacttatgttttaattc 924  Q
    ||||| ||||||||| |||||| | || |||||||||||  || | |||||||||||||| |||| |||||||||    
T  19521463 ttttgaaaattgtgcattcaatgtattaaaagtttaaaattttgtcttttcaatacaaaagttattttttaattc 19521537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 924
Target Start/End: Original strand, 3328605 - 3328638
Alignment:
Q  891 ttattttttcaatacaaaacttatgttttaattc 924  Q
    ||||||||| ||||||||||||||||||||||||    
T  3328605 ttatttttttaatacaaaacttatgttttaattc 3328638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 914
Target Start/End: Complemental strand, 6988696 - 6988575
Alignment:
Q  794 aaatgttaacttgtgc-tcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    |||||||||||||| | |||| ||  |||| |||| |||| |||| || ||||||  ||||  ||||||||| |||||| | || ||||||| |||  ||    
T  6988696 aaatgttaacttgtacatcttcaggtacaaatttaaaaactaaatataaaaacttttttttaaaaattgtgcattcaatatattaaaagtttgaaatttt 6988597  T
Q  893 attttttcaatacaaaacttat 914  Q
    ||||||||||||||||| ||||    
T  6988596 attttttcaatacaaaagttat 6988575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 3e-48; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 32274581 - 32274711
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||| |||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32274581 ttatcatatgtgactttaatgataaatacggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 32274680  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  32274681 aaacatcaaaagaaaatgaatggagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 2543228 - 2543358
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  2543228 ttatcacatgtgaatttaatgataaataaagacatttaagtaaaaaacacacagatgtttatatactttaattacttcttaaaacttgtgtcaagagcta 2543327  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||| |||||||||| |||| |||||||||    
T  2543328 aaacatcaaaagaaaacgaatggagggagta 2543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 27312246 - 27312114
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaat-acacaaatgtttatatactttaattactccttaaaacttgtgtc-aagagc 236  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27312246 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgtctaagagc 27312147  T
Q  237 taaaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||||| ||||||||||||||| |||||||||    
T  27312146 taaaacatcaaaagaaaaggaatggagggagta 27312114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 29452672 - 29452539
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| || ||| ||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  29452672 ttatcacatgtgaatttaatgataaataatgactttttagtcaaaaacacacaaatatttatatactttaattactccttaaaacttgtgccaagagtta 29452573  T
Q  239 aaacaacaaaagaaaaggaatagagggagtaata 272  Q
    ||||| ||||||||||  ||||||||||||||||    
T  29452572 aaacatcaaaagaaaataaatagagggagtaata 29452539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 5008308 - 5008398
Alignment:
Q  169 gacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaat 259  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5008308 gacatttaagtaaaaaacacacaaatatttatatactttaattactccttaaaacttgtgttaagagctaaaacatcaaaagaaaaggaat 5008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 793 - 892
Target Start/End: Original strand, 2588765 - 2588864
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| | |||| |||||||||||||    
T  2588765 gaaatgttaacttgtgcccttaagacacaagtttataaaccaaatgtagaaacttaattttgaaaattgtgcattcaatatcttgatagtttaaaaagtt 2588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 31171120 - 31170990
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||| | | |||||||||||||| ||||||||||||||||||||||||||| |||||  |||| |||    
T  31171120 ttatcacatgtgaatttaatgataaataaggatattttaatcaaaaatacacaaatatttatatactttaattactccttaaaatttgtgctaagaacta 31171021  T
Q  239 aaacaacaaaagaaaaggaatagagggagta 269  Q
    ||| | ||||||||||| ||| |||||||||    
T  31171020 aaatatcaaaagaaaagaaatggagggagta 31170990  T

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Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 7156367 - 7156251
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||| |||| ||| ||| | |||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  7156367 ttatcacatgtgaatttaatgataaataaggatattttagtcaaagacacacaaatatttatatactttaattattccttaaaacttgtatcaagagcta 7156268  T
Q  239 aaacaacaaaagaaaag 255  Q
    ||||| |||||| ||||    
T  7156267 aaacatcaaaagcaaag 7156251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 788 - 950
Target Start/End: Original strand, 357136 - 357302
Alignment:
Q  788 tatgggaaatgttaacttgtgctcttaag----acacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtt 883  Q
    ||||||||||| |||||||||| ||||||    |||||| ||||||| ||||||||||||| ||| ||||| ||||||||| |||||| | ||||||  |    
T  357136 tatgggaaatgctaacttgtgcccttaaggaagacacaaatttagaagccaaatgtagaaatttatttttgaaaattgtgcattcaatgttttgaaaagt 357235  T
Q  884 taaaaagttattttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    || ||| ||| ||||||||||||||||||||||||||||||       ||||| |||||||||||||    
T  357236 tacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgccc 357302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 812 - 924
Target Start/End: Original strand, 31954800 - 31954912
Alignment:
Q  812 ttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagttattttttcaatacaaaact 911  Q
    ||||| || |||||||||| ||||||||| |||||||||||| |||||| ||| | |||| | |||||| |||||||| |||||||||||||||||||||    
T  31954800 ttaaggcagaagtttagaagccaaatgtaaaaacttaattttagaaattatgcatacaatgtcttgaaaatttaaaaacttattttttcaatacaaaact 31954899  T
Q  912 tatgttttaattc 924  Q
    |||||||||||||    
T  31954900 tatgttttaattc 31954912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 5003912 - 5003975
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5003912 ttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaag 5003975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 27312363 - 27312300
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27312363 ttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaag 27312300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 32274464 - 32274527
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32274464 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaag 32274527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 8504797 - 8504733
Alignment:
Q  205 tttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaatagagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  8504797 tttaattactccttaaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 12174730 - 12174793
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12174730 ttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 12174793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 8504949 - 8504888
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctca 128  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8504949 ttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctca 8504888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 7156464 - 7156413
Alignment:
Q  75 tcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7156464 tcaactatattccaaaactttagatgttttagtgaatttattattgttttct 7156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 793 - 950
Target Start/End: Complemental strand, 33565645 - 33565487
Alignment:
Q  793 gaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtt 892  Q
    ||||| ||||||||||| ||||||  ||||||| ||||||| ||||||||||| |||||||||||||||||| |||||| | |  ||||  |||||| ||    
T  33565645 gaaattttaacttgtgc-cttaaggaacaagttaagaaacctaatgtagaaacataattttggaaattgtgcattcaatgtctcaaaagcataaaaactt 33565547  T
Q  893 a--ttttttcaatacaaaacttatgttttaattcnnnnnnnagatccttaacttgtgccc 950  Q
    |  |||||||  ||||||| ||||||||||||||       | |||||||||||||||||    
T  33565546 attttttttcgctacaaaatttatgttttaattcttttctaaaatccttaacttgtgccc 33565487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 18742136 - 18742224
Alignment:
Q  182 aaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagctaaaacaacaaaagaaaaggaatagagggagtaa 270  Q
    |||| |||||||| ||| ||||| ||||||| ||||||| ||||||| |||||| ||||||| ||||||||||| ||| ||||||||||    
T  18742136 aaaacacacaaatatttttatacattaattattccttaagacttgtgccaagaggtaaaacatcaaaagaaaagaaatggagggagtaa 18742224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 798 - 923
Target Start/End: Original strand, 3768053 - 3768179
Alignment:
Q  798 gttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaagtta-ttt 896  Q
    |||||||||||| |||||| ||||||||||| |  ||| |||| ||||||| ||||||||||||||  |||||| | ||||||  ||||||| | | |||    
T  3768053 gttaacttgtgcccttaaggcacaagtttagtagtcaagtgtaaaaacttatttttggaaattgtgtattcaatatcttgaaaagttaaaaactcatttt 3768152  T
Q  897 tttcaatacaaaacttatgttttaatt 923  Q
    ||||||||||||  ||||| |||||||    
T  3768153 tttcaatacaaagtttatgctttaatt 3768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 29452790 - 29452726
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttatta-ttgttttctcaag 130  Q
    |||||||||||||||||||| |||  | ||||||||||||||||||||||| |||||||||||||    
T  29452790 ttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaag 29452726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 31171237 - 31171174
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||| ||||| | ||||||||||| || |||||| |||||||||||||||||||||||||||    
T  31171237 ttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaag 31171174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 791 - 897
Target Start/End: Original strand, 12622501 - 12622607
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaatttgttgaaagtttaaaaag 890  Q
    ||||||||||||||||||| ||| || || ||||| || ||| ||| ||||||  ||  ||||| ||||||||| |||||| | |||||||||| |||||    
T  12622501 gggaaatgttaacttgtgcccttgaggcataagttaaggaactaaaagtagaagtttttttttgtaaattgtgcattcaatgtcttgaaagtttcaaaag 12622600  T
Q  891 ttatttt 897  Q
    |||||||    
T  12622601 ttatttt 12622607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 2543142 - 2543174
Alignment:
Q  98 atgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||||||    
T  2543142 atgttttagtgaatttattattgttttctcaag 2543174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18741977 - 18742039
Alignment:
Q  67 ttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 129  Q
    |||| ||||||||| |||| |||||| ||||||||||||||  ||||| |||||| |||||||    
T  18741977 ttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaa 18742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 94; Significance: 3e-45; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 44767 - 44885
Alignment:
Q  139 ttatcacatgtgaatttaataataaacaaggacatttaagtaaaaaatacacaaatgtttatatactttaattactccttaaaacttgtgtcaagagcta 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44767 ttatcacatgtgaatttaatgataaataaggacatttaagtaaaaaa--cacaaatatttatatactttaattactccttaaaacttgtgtcaagagcta 44864  T
Q  239 aaacaacaaaagaaaaggaat 259  Q
    ||||| |||||||||||||||    
T  44865 aaacatcaaaagaaaaggaat 44885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 44652 - 44713
Alignment:
Q  69 agaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaag 130  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44652 agaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaag 44713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 58; Significance: 9e-24; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 444 - 568
Target Start/End: Complemental strand, 13668 - 13546
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| |||||||||||||| |||||||  ||||||| | ||||||||||| |||| ||||| |||||||||||||||| | ||||||| || | || |    
T  13668 tttttttaacaagcaaaaatggattatat--taacactgcaaaaatagccctttcagcacaagatgtaccgaaaaaactattaaaaacgagaccaacagt 13571  T
Q  544 ttacaagattacaccaaaatgttaa 568  Q
    ||||||||||||| |||||||||||    
T  13570 ttacaagattacaacaaaatgttaa 13546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 444 - 544
Target Start/End: Original strand, 5681 - 5779
Alignment:
Q  444 ttttttaaacaagcaaaaatgaattatatattaacacttctaaaatagccctctcagtacaaggtgtaccgaaaaaactacttaaaacgaaactagcaat 543  Q
    |||||| ||||| |||||||| |  ||||||||||||| |||||  ||||| ||||| ||||| ||||||||||| |||||| ||||||| || ||||||    
T  5681 ttttttgaacaaacaaaaatgga--atatattaacactgctaaagcagcccactcagcacaagatgtaccgaaaagactactaaaaacgatacaagcaat 5778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 923
Target Start/End: Original strand, 13358 - 13490
Alignment:
Q  791 gggaaatgttaacttgtgctcttaagacacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcgttcaat-ttgttgaaagtttaaaaa 889  Q
    |||||||||||||||||| ||| ||| |||||||| ||||| ||||  ||||||| |  | ||||||||||||| |||||| || | |||| |||||||     
T  13358 gggaaatgttaacttgtgttctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaattgtgcattcaatattctagaaa-tttaaaat 13456  T
Q  890 gttattttttcaatacaaaacttatgttttaatt 923  Q
     |||| ||||||| ||| || ||||| |||||||    
T  13457 cttatcttttcaagacataatttatgatttaatt 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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