View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_high_18 (Length: 425)

Name: NF18309_high_18
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_high_18
NF18309_high_18
[»] chr2 (20 HSPs)
chr2 (18-224)||(11110099-11110305)
chr2 (218-417)||(11110374-11110577)
chr2 (18-216)||(11118103-11118301)
chr2 (18-216)||(11145250-11145448)
chr2 (287-417)||(11118397-11118527)
chr2 (18-216)||(10793990-10794188)
chr2 (18-178)||(11136951-11137111)
chr2 (20-211)||(11104106-11104297)
chr2 (18-178)||(11149184-11149344)
chr2 (20-216)||(11155569-11155765)
chr2 (20-112)||(11200121-11200213)
chr2 (313-417)||(10793748-10793852)
chr2 (82-211)||(11171239-11171368)
chr2 (322-376)||(11097401-11097455)
chr2 (80-217)||(11177243-11177380)
chr2 (313-374)||(11178531-11178592)
chr2 (320-376)||(11145573-11145629)
chr2 (18-129)||(11095645-11095756)
chr2 (320-380)||(11172386-11172446)
chr2 (18-126)||(11191956-11192064)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 11110099 - 11110305
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110099 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 11110198  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggtacatatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  11110199 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcgtctggaatatcttctgttctggtacatatt 11110298  T
Q  218 attagtt 224  Q
     ||||||    
T  11110299 tttagtt 11110305  T

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Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 218 - 417
Target Start/End: Original strand, 11110374 - 11110577
Alignment:
Q  218 attagttaagaatattattacttcttt-----tattcattgtatgatcttaaaataatacaatcaatctatttccacagactgggggtccaggttgggag 312  Q
    ||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11110374 attagttaa-aatattattacttctttaattttattcattgtatgatcttaaaataatacaatcaatctatttacacagactgggggtccaggttgggag 11110472  T
Q  313 gttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaacttcagtctagatcgacttaaatctgcct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110473 gttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaacttcagtctagatcgacttaaatctgcct 11110572  T
Q  413 ttgct 417  Q
    |||||    
T  11110573 ttgct 11110577  T

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Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 11118103 - 11118301
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    |||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  11118103 gttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgttatcaa 11118202  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggtacatat 216  Q
    ||| || || ||| | |||||||||| ||| ||||||| ||||||||||||||||||||| |||||||| |||||| |||||||  |||||||| ||||    
T  11118203 tcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatcttcagttctggtaaatat 11118301  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 11145250 - 11145448
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |  ||||| || ||||| ||||||||| | ||    
T  11145250 gttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttgtgaa 11145349  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggtacatat 216  Q
    ||||||||| ||   ||| ||||| ||||||||||| | |||||||||||||||||||||| | ||||| |||| | |||| ||||  |||||| ||||    
T  11145350 tcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgctgaattatcatctacactggtatatat 11145448  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 417
Target Start/End: Original strand, 11118397 - 11118527
Alignment:
Q  287 cacagactgggggtccaggttgggaggttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaactt 386  Q
    |||||| ||||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||     
T  11118397 cacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcccagctc 11118496  T
Q  387 cagtctagatcgacttaaatctgcctttgct 417  Q
    ||||||||||| |||||||||| ||||||||    
T  11118497 cagtctagatcaacttaaatcttcctttgct 11118527  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 10794188 - 10793990
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    |||| ||||||||  ||||| |||| ||||| || ||||| ||||| |||| | | ||| | ||||||||||||||| ||||||| ||| | ||| | ||    
T  10794188 gttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttgcaagttgtgaa 10794089  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggtacatat 216  Q
    ||  ||||||||  | |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||  | |||||||||||    
T  10794088 tcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgctagaatatcttccgtcctggtacatat 10793990  T

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Target: chr2; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 11136951 - 11137111
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    ||||||||||||||||||| ||||| || || |  || ||||||||||||||||| ||||| ||||||||||||||  || |||| ||||||||| | ||    
T  11136951 gttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaa 11137050  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt 178  Q
    ||||||||| ||   ||||||||| ||||| ||||| | ||||||||||||||||||||||    
T  11137051 tcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattctt 11137111  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 11104106 - 11104297
Alignment:
Q  20 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc 119  Q
    ||||||| ||||||||||||||| ||||| |  || |||||||||||||||||||| |||||||| |  ||||| ||||   | ||||||||| | |||     
T  11104106 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaata 11104205  T
Q  120 aaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggta 211  Q
    ||||||||||   ||| ||| |||  || ||||| |  |||||||||||||||||||||||  |||| |||| | |||||||||||||||||    
T  11104206 aaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 11104297  T

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Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 11149184 - 11149344
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    |||||||||||||||||||  |||| || || |  ||  |||||||||||||||||||||||||||| |  ||||| |||||||| || |||||| | ||    
T  11149184 gttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttgtgaa 11149283  T
Q  118 tcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt 178  Q
    ||||||||| ||    |||||||| ||||| ||||| | ||||||||| ||||||||||||    
T  11149284 tcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattctt 11149344  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 11155569 - 11155765
Alignment:
Q  20 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc 119  Q
    |||||||| || ||||||||||| || || || || || || || |||||| | ||||||||||||| |||||| |||||||| ||||||||| | ||||    
T  11155569 tgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgtaaatc 11155668  T
Q  120 aaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcggctggaatatcttctattctggtacatat 216  Q
    | ||||| |||    | ||||  ||||| ||||| | |||||||||||||||||||||| | ||||| |||  |  ||| ||| |||||||||||||    
T  11155669 agatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgctcaagcatcctctgttctggtacatat 11155765  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 11200121 - 11200213
Alignment:
Q  20 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 112  Q
    ||||||||||| |||||| |||| ||||| ||||| || || || |||||| | ||||||||||||||||||||| ||||||| |||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgtt 11200213  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 10793852 - 10793748
Alignment:
Q  313 gttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaacttcagtctagatcgacttaaatctgcct 412  Q
    |||||| | |||||||||||||||||||||||||||| | |||| || ||||||||||||||||  ||   ||||| ||||  || |||||||||| |||    
T  10793852 gttccattgggaagaagggatagtctaacagcaaatcgaaccctcgcaaatcaaaatcttccagcccctttcttcaatctaagtcaacttaaatcttcct 10793753  T
Q  413 ttgct 417  Q
    |||||    
T  10793752 ttgct 10793748  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 11171239 - 11171368
Alignment:
Q  82 aaatatcaactccttaagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttaca 181  Q
    ||||| ||||||  ||||||| || |||||| | ||||||||||| ||   ||||||||| ||||| ||||| |  ||||||||||||||||||||| |     
T  11171239 aaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgct 11171338  T
Q  182 cttgcggctggaatatcttctattctggta 211  Q
    ||||| |||| ||| || ||| ||||||||    
T  11171339 cttgctgctgaaatttcctctgttctggta 11171368  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 11097401 - 11097455
Alignment:
Q  322 ggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccag 376  Q
    ||||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||    
T  11097401 ggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaaccttccag 11097455  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 11177243 - 11177380
Alignment:
Q  80 ccaaatatcaactccttaagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctta 179  Q
    ||||||| ||||||| ||||||| ||||| || || || || ||||| ||    |||||||| ||||| ||||| |  |||||||||||||||||||||     
T  11177243 ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttg 11177342  T
Q  180 cacttgcggctggaatatcttctattctggtacatatt 217  Q
    | ||| | |||| ||||||||||  ||||||| |||||    
T  11177343 ccctttctgctgaaatatcttctgatctggtatatatt 11177380  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 11178531 - 11178592
Alignment:
Q  313 gttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttcc 374  Q
    |||||| ||||||||||||||||| ||||||||||| | ||||||||   ||||||||||||    
T  11178531 gttccattaggaagaagggatagtttaacagcaaataattcccttgcagctcaaaatcttcc 11178592  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 11145573 - 11145629
Alignment:
Q  320 taggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccag 376  Q
    |||||||||| ||| || |||||||||| ||||| ||||| ||||||||||||||||    
T  11145573 taggaagaagagatggtttaacagcaaaccaatcacttgctaatcaaaatcttccag 11145629  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 11095645 - 11095756
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    ||||||||| ||||||||||||||| |||||    || || || ||||| ||||||||  ||||||| || ||||| ||||| || ||||||||| | ||    
T  11095645 gttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgttgtaaa 11095744  T
Q  118 tcaaatcaagac 129  Q
     |||||||||||    
T  11095745 ccaaatcaagac 11095756  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 11172386 - 11172446
Alignment:
Q  320 taggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcc 380  Q
    |||||||||| |||||| |||||||||||| | ||||||| |||  |||||||||| ||||    
T  11172386 taggaagaagagatagtttaacagcaaatctaacccttgctaatataaatcttccaagtcc 11172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 11192064 - 11191956
Alignment:
Q  18 gttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaa 117  Q
    |||||||||||||| | ||||||||| || | |  ||||| |||||||| ||||  ||||| |||||||  |||||  ||||||| |||||| || | ||    
T  11192064 gttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaa 11191965  T
Q  118 tcaaatcaa 126  Q
    |||||||||    
T  11191964 tcaaatcaa 11191956  T

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