View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_high_27 (Length: 376)
Name: NF18309_high_27
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 50407225 - 50406894
Alignment:
| Q |
29 |
aaaaaccagctagaccgagtgaaatatacaaaaacttgtataaaacaccaagttcgttgttctgtttgaccggtttcatgtatcgaattgttcgaagaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50407225 |
aaaaaccagctagaccgagtgaaatatacaaaaacttgtaaaaaacaccaagttcgttgttctgtttaaccggtttcatgtatcgaattgttcgaagaaa |
50407126 |
T |
|
| Q |
129 |
aagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcacca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407125 |
aagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcacca |
50407026 |
T |
|
| Q |
229 |
ctaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagact |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407025 |
ctaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagact |
50406926 |
T |
|
| Q |
329 |
gagaattagcacctatacaaatgtaaagacac |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
50406925 |
gagaattagcacctatacaaatgtaaagacac |
50406894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 100 - 360
Target Start/End: Complemental strand, 50385122 - 50384862
Alignment:
| Q |
100 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
199 |
Q |
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|||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||| |
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| T |
50385122 |
ggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatag |
50385023 |
T |
|
| Q |
200 |
cagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagt |
299 |
Q |
| |
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|||| ||||| |||||||| || |||||||| ||||||||||| ||||| | ||| ||||| || | || |||| ||| |||||||||||||||||||| |
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| T |
50385022 |
cagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagt |
50384923 |
T |
|
| Q |
300 |
aacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacac |
360 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50384922 |
cacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacac |
50384862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 100 - 360
Target Start/End: Complemental strand, 50393541 - 50393281
Alignment:
| Q |
100 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
199 |
Q |
| |
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|||||||| || ||||| |||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||| |
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| T |
50393541 |
ggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatag |
50393442 |
T |
|
| Q |
200 |
cagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagt |
299 |
Q |
| |
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|||| ||||| |||||||| || |||||||||||||||||||||||||| | ||| ||||| || | || |||| ||| |||||||||||||||||||| |
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| T |
50393441 |
cagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagt |
50393342 |
T |
|
| Q |
300 |
aacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacac |
360 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50393341 |
cacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacac |
50393281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 148 - 360
Target Start/End: Complemental strand, 50390219 - 50390007
Alignment:
| Q |
148 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
247 |
Q |
| |
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||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
50390219 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
50390120 |
T |
|
| Q |
248 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctataca |
347 |
Q |
| |
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||| ||| ||||| ||| | || |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |
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| T |
50390119 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaattagcacctatgca |
50390020 |
T |
|
| Q |
348 |
aatgtaaagacac |
360 |
Q |
| |
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||||||||||||| |
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| T |
50390019 |
aatgtaaagacac |
50390007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 24223995 - 24223916
Alignment:
| Q |
165 |
caaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataac |
244 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataac |
24223916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 41334118 - 41333962
Alignment:
| Q |
204 |
ataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaaca |
303 |
Q |
| |
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||||| |||||| |||||||||||||| | |||||||||||||||||||| || || ||| ||||||| | | ||||||||||||||||||||||| |
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| T |
41334118 |
ataaatttgtgtaataatagcaccacttaaaccaacataaccttttaaaagacctaaaacactaccacgactattagggaaattcttaacacaagtaact |
41334019 |
T |
|
| Q |
304 |
agtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacac |
360 |
Q |
| |
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| | ||| ||||| | ||||| |||||||| ||||| || ||||| ||||||||| |
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|
| T |
41334018 |
aaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacac |
41333962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 41334209 - 41334161
Alignment:
| Q |
122 |
gaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaat |
170 |
Q |
| |
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||||||||||||| |||| ||||| ||||||||||||||||| ||||| |
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|
| T |
41334209 |
gaagaaaaagaaaagaaacagcagcaggaagccaagcaataagtaaaat |
41334161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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