View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18309_high_30 (Length: 355)
Name: NF18309_high_30
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 45685639 - 45685307
Alignment:
| Q |
20 |
ctgtgatcggaggattggatagtccaagaggactcagaccataatttagatttttgcttgtgaacaaatgctttgagttatttaattgatgcagctcaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45685639 |
ctgtgatcggaggattggatagtccaagaggactcagaccataatttagatttttgcttgtgaacaaatgctttgagttatttaattgatgcagctcaca |
45685540 |
T |
|
| Q |
120 |
ttggtattggattttgttgaaatagagtgaaaatgagacagacatatggttaaaccctgtgtctgaactacgcagcgaagtc--nnnnnnnnataggctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45685539 |
ttggtattggattttgttgaaatagagtgaaaatgagacagacatatggttaaaccctgtgtctgaactacgcagcgaagtcttttttttttataggctc |
45685440 |
T |
|
| Q |
218 |
aaagcaaaaattacaaatataaatataggcaattctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45685439 |
aaagcaaaaattacaaatataaatataggcaattctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaac |
45685340 |
T |
|
| Q |
318 |
agattcattatagattgataacctcttctctct |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45685339 |
agattcattatagattgataacctcttctctct |
45685307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 13178398 - 13178327
Alignment:
| Q |
249 |
attctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaacaga |
320 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||||| |||| | |||| ||||||| ||||||||| |
|
|
| T |
13178398 |
attctatccctatctacatgatatgatatgcttatacaataaatacaaagatcataatatatgttcaacaga |
13178327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 34392280 - 34392214
Alignment:
| Q |
252 |
ctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
34392280 |
ctatccctatttacttgatatgatattcctatacaataaatacaatggtcataatatattttcaaca |
34392214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 49931942 - 49931894
Alignment:
| Q |
262 |
ttacttgatatgatatgcctatacaataagtacatatatcagaatatat |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| | |||| ||||||| |
|
|
| T |
49931942 |
ttacatgatatgatatgcctatacaataaatacaaagatcataatatat |
49931894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University