View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_high_36 (Length: 316)
Name: NF18309_high_36
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 17776244 - 17775946
Alignment:
| Q |
1 |
tttgtaggtttggggattatgatcatatatttaataaccctttaaacacattaatgtcatgaaagctttggtctatccagtactacaagtcaagacacta |
100 |
Q |
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| T |
17776244 |
tttgtaggtttggggattatgatcatatatttaataaccctttaaacacattaatgtcatgaaagctttggtctatccagtactacaagtcaagacacta |
17776145 |
T |
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| Q |
101 |
gatcaaagttccatgtaaattaataataattacataacataatgtttgaaactttgaaataacatttggaaacgtggaagtgaaccagattccaaaacat |
200 |
Q |
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| T |
17776144 |
gatcaaagttccatgtaaattaataataattacataacataatgtttgaaactttgaaataacatttggaaacgtggaagtgaaccagattccaaaacat |
17776045 |
T |
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| Q |
201 |
agctcaaatatatataattcaactgcaaattccactgtgacacacttaggattatattattgtaggcctcttggaatcctaaaatccagtttctattcca |
300 |
Q |
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| T |
17776044 |
agctcaaata--tataattcaactgcaaattccactgtgacacacttaggattatattattgtaggcctcttggaatcctaaaatccagtttctattcca |
17775947 |
T |
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