View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_high_42 (Length: 247)
Name: NF18309_high_42
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 18345644 - 18345440
Alignment:
| Q |
28 |
attttcaccctcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaa |
127 |
Q |
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| T |
18345644 |
attttcaccctcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaa |
18345545 |
T |
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| Q |
128 |
acaaccacctcttcaacatctacgtccatgcagatcccaccacctatgttgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccac |
227 |
Q |
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| T |
18345544 |
acaaccacctcttcaacatctacgtccatgcagatcccaccacctatgtcgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccac |
18345445 |
T |
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| Q |
228 |
caaac |
232 |
Q |
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||||| |
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| T |
18345444 |
caaac |
18345440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 18340466 - 18340290
Alignment:
| Q |
49 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatggg-aaaaattcttcgttggaaacaaccacctcttcaacatc |
147 |
Q |
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||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||| || |
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| T |
18340466 |
aaacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatggggaaaaattcttcaccggaaacaaccatctcttcaatata |
18340367 |
T |
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| Q |
148 |
tacgtccatgcagatcccaccacctatgttgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacc |
224 |
Q |
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||| |||||||||| |||||||||| || | |||||| |||||||||||||| |||||||||||| |||||||||| |
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| T |
18340366 |
tacatccatgcagaccccaccacctccgtcgtctcccctggcggtgtcttccataaccgtttcatctcttccaaacc |
18340290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 18303237 - 18303349
Alignment:
| Q |
49 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaaccacctcttcaacatct |
148 |
Q |
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|||||||||||||| |||||||||||||| ||| | ||| ||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| |
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| T |
18303237 |
aaacccaaaatcgccttcctcttcctcacaaacaccaacttcacctttgctcctttgtgggaaatattctttactggaaacaaccacctcttcaacatct |
18303336 |
T |
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| Q |
149 |
acgtccatgcaga |
161 |
Q |
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|| |||| ||||| |
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| T |
18303337 |
acatccacgcaga |
18303349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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