View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_high_9 (Length: 580)
Name: NF18309_high_9
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 39473854 - 39474406
Alignment:
| Q |
20 |
tactactattactattctcttcaactctctggtagcctgtgaattcaaaccagaaagatgtgatgttttcttctcatctgtaacctaactctttggtgtt |
119 |
Q |
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| T |
39473854 |
tactactattactactctcttcaactctctggtatcctgtgaattcaaaccagagagatgtgatgttttcttctcatctgtaacctaactctttggtgtt |
39473953 |
T |
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| Q |
120 |
ttcttcaactctctggtagcctgttatattaatttgacacacaaatttgacattaaaattcaacgacaacttaaatgattaagtacatgattttaggtgc |
219 |
Q |
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| T |
39473954 |
ttcttcaactctctggtagcctgttatattaatttgacacacaaatttgacattaaaattcaacgacaacttaaatgattaagtacatgattttaggtgc |
39474053 |
T |
|
| Q |
220 |
tcaaatacacgtgatattcattaacaacgatttaggttcaagtatacatttgaaaatcatggtttctgaccttcaaaattgcggtt-atttcattgagtg |
318 |
Q |
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| T |
39474054 |
tcaaatacacgtgatattcattaacaatgatttaggttcaagtatacatttgaaaatcatggtttctgaccttcaaaattgcagttaatttcattgagtg |
39474153 |
T |
|
| Q |
319 |
aatattacattcattaaccatccactgaatgtaattaaacaaatattttaattacgttaaccatttcattgttgttgacttttactttcaaattgtgtgt |
418 |
Q |
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| T |
39474154 |
aatattacattcattaaccatccactgaacgtaattaaacaaatattttaattacgttaaccatttaattgttgtcgacttttactttcaaattgtgtgt |
39474253 |
T |
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| Q |
419 |
cgaaataccatttctccagggttcagtgctcattctcattttcatttcttttaagcaaagtacagatatttctcacctgatgagttcctcctcatgtcag |
518 |
Q |
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| T |
39474254 |
cgaaataccatttctccagggttcagtgctcattctcattttcatttcttttaagcaaagtacagatatttctcacctgatgagttcctcctcatgtcag |
39474353 |
T |
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| Q |
519 |
aggctttggttactcaagctgagaagcttaaggaaattgttgacaccctttgc |
571 |
Q |
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| T |
39474354 |
aggctttggttactcaagctgagaagcttaaggaaattgttgacaccttttgc |
39474406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 481 - 571
Target Start/End: Original strand, 39478289 - 39478379
Alignment:
| Q |
481 |
cagatatttctcacctgatgagttcctcctcatgtcagaggctttggttactcaagctgagaagcttaaggaaattgttgacaccctttgc |
571 |
Q |
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| T |
39478289 |
cagatatttctcacctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgc |
39478379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 39485496 - 39485568
Alignment:
| Q |
493 |
acctgatgagttcctcctcatgtcagaggctttggttactcaagctgagaagcttaaggaaattgttgacacc |
565 |
Q |
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| T |
39485496 |
accttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacacc |
39485568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 43432544 - 43432484
Alignment:
| Q |
214 |
aggtgctcaaatacacgtgatattcattaacaacgatttaggttcaagtatacatttgaaa |
274 |
Q |
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| T |
43432544 |
aggtgttcaaatatacatgatattcattaaccacgatgtatgttcaaatatacacttgaaa |
43432484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 3758686 - 3758649
Alignment:
| Q |
329 |
tcattaaccatccactgaatgtaattaaacaaatattt |
366 |
Q |
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| T |
3758686 |
tcattaaccatccactgaatgtaattaaccacatattt |
3758649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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