View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_11 (Length: 527)
Name: NF18309_low_11
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 33543375 - 33543817
Alignment:
| Q |
16 |
catgaatcagtttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543375 |
catgaatcagtttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagta |
33543474 |
T |
|
| Q |
116 |
gaataaaatttgttttctttgtatgattgagattaagcaatataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543475 |
gaataaaatttgttttctttgtatgattgagattaagcaatataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtccatg |
33543574 |
T |
|
| Q |
216 |
catgcatgattgtttttacttgttgttgaacaaaaactttgctttatataatgtggattatgaaattgaaactgaataaaactgcaagctttgtggatta |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
33543575 |
catgcatgattgtttttacttgttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtggatta |
33543674 |
T |
|
| Q |
316 |
aggtctaacaaagttagtttttccattccgtaaaacttttacaaatttaagatgtctttgacaggggaatgaggagatataaccaaaagggtctttgaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33543675 |
aggtctaacaaagttagtttttccattccgtaaaacttaaacaaatttaagatgtctttgacaggggaataaggagatataaccaaaagggtctttgaca |
33543774 |
T |
|
| Q |
416 |
tagattgatatg-----accaagctcattacaatgtcgtcttt |
453 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
33543775 |
tagattgatatgatataaccaagctcattacaatgtcgtcttt |
33543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 33361650 - 33361261
Alignment:
| Q |
16 |
catgaatcagtttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33361650 |
catgaatcagtttaggggaggaattgttggaatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagta |
33361551 |
T |
|
| Q |
116 |
gaataaaatttgttttctttgtatgattgagattaagcaatataa---aataatgaaattgaagttttatacttgttggataaaatgattgagattgtcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33361550 |
gaataaaatttgttttctttgtatgattgagattaagcaatataataaaataatgaaattgaagttttatacttgttggataaaatgattgagattgtcc |
33361451 |
T |
|
| Q |
213 |
atgcatgcatgattgtttttacttgttgttgaacaaaaactttgctttatataatgtggattatgaaattgaaactgaataaaactgcaagctttgtgga |
312 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
33361450 |
atgcatgcatgattgtttttacttgttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtgga |
33361351 |
T |
|
| Q |
313 |
ttaaggtctaacaaagttagtttttccattccgtaaaacttttacaaatttaagatgtctttgacaggggaatgaggagatataaccaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
33361350 |
ttaaggtctaacaaagttagtttttccattccgtaaaactttaacaaatttaagatgtctttgacaggggaataaggagatatagccaaa |
33361261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 33355783 - 33355734
Alignment:
| Q |
462 |
aatgttgtctttgtcgtactctacatccgccaccgctccacacctttcat |
511 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355783 |
aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttcat |
33355734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 33355836 - 33355772
Alignment:
| Q |
394 |
ataaccaaaagggtctttgacatagattgatatg-----accaagctcattacaatgtcgtcttt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33355836 |
ataaccaaaagggtctttgacatagattgatatgatataaccaagctcattacaatgtcgtcttt |
33355772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 33543812 - 33543855
Alignment:
| Q |
468 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
511 |
Q |
| |
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| T |
33543812 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
33543855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 45345632 - 45345733
Alignment:
| Q |
18 |
tgaatcagtttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtaga |
117 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
45345632 |
tgaatcaatttaggggaggaattgttaggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggttccaccaagtaga |
45345731 |
T |
|
| Q |
118 |
at |
119 |
Q |
| |
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|| |
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|
| T |
45345732 |
at |
45345733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 45341300 - 45341400
Alignment:
| Q |
38 |
attgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgt |
137 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||| |
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| T |
45341300 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgt |
45341399 |
T |
|
| Q |
138 |
a |
138 |
Q |
| |
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| |
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|
| T |
45341400 |
a |
45341400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 28302770 - 28302671
Alignment:
| Q |
39 |
ttgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgta |
138 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28302770 |
ttgttcggatttattttaatgttactatttatttgggttcagttaataagttcttagtttctaggttccaccaagtagaattgcatttgttttctttgta |
28302671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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