View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_12 (Length: 522)
Name: NF18309_low_12
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 33675858 - 33675361
Alignment:
| Q |
20 |
agtggtgcctcttttaaacgtactttgtttaataaacaagggctggtagaattatcctcaaaattccataaagaaacagcagcagaatgtatgaatagga |
119 |
Q |
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| T |
33675858 |
agtggtgcctcttttaaacgtactttgtttaataaacaagggctggtagaattatcctcaaaattccataaagaaacagcagcagaatgtatgaatagga |
33675759 |
T |
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| Q |
120 |
ggtgacactggttctgagcaaccaccaaacttgacacattacacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattata |
219 |
Q |
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| T |
33675758 |
ggtgacactggttctgagcaaccaccacacttgacacattagacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattata |
33675659 |
T |
|
| Q |
220 |
ctattaattttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaac |
319 |
Q |
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| T |
33675658 |
ctattaattttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaac |
33675559 |
T |
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| Q |
320 |
tcaacccaaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattcctttt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33675558 |
tcaacccaaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattcctttt |
33675459 |
T |
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| Q |
420 |
attcatgttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttcgaca |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33675458 |
attcatgttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggaca |
33675361 |
T |
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