View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_13 (Length: 514)

Name: NF18309_low_13
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_13
NF18309_low_13
[»] chr7 (1 HSPs)
chr7 (15-161)||(3336114-3336257)
[»] chr2 (3 HSPs)
chr2 (15-112)||(12370058-12370155)
chr2 (330-410)||(12369813-12369892)
chr2 (128-161)||(12370011-12370044)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 3336257 - 3336114
Alignment:
Q  15 aatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgttatcacann 114  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||      
T  3336257 aatattcaaaattgtcccaatccaaatgcaagctgcacagccaaatcctgtcaaacacgtttgcttgcttcctccccaattcaagcagtgttatcaca-- 3336160  T
Q  115 nnnnnnctctgctttttaacaaaccctaaccctactcctagtcctat 161  Q
          |||| | ||||||||||||||||| ||||||||||||||||    
T  3336159 ttttttctctac-ttttaacaaaccctaactctactcctagtcctat 3336114  T

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Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 12370155 - 12370058
Alignment:
Q  15 aatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgttatcaca 112  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12370155 aatatccaaaattgtcccaatccaaatgcaagctgtacagccaaatcctgtcaaacgtgtttgcttgcttcctccccaattcaagcagtgttatcaca 12370058  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 12369892 - 12369813
Alignment:
Q  330 ttacagccgtagttacatatatatgtttcatcgctactgttgaattatttggatcccaatccctaccattttccattgccg 410  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  12369892 ttacagccgtagttccatatatatgtttcatcgctattgttgaattatttggat-ccaatccctaccattttcccttgccg 12369813  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 12370044 - 12370011
Alignment:
Q  128 ttttaacaaaccctaaccctactcctagtcctat 161  Q
    ||||||||||||||||||||||||||| ||||||    
T  12370044 ttttaacaaaccctaaccctactcctaatcctat 12370011  T

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