View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18309_low_14 (Length: 507)
Name: NF18309_low_14
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 30383964 - 30384455
Alignment:
| Q |
1 |
caatgagatgaatgctattacaacggttcaccgcttcgagaattgcttggtttgaagtaaaatgtgaaaatttgatgaaaggggaaatattgttgaacac |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30383964 |
caatgatatgaatgctattacaacggttcaccgcttcaagaattgcttggtttgaagtaaaatgtgaaaatttgatgaaaggggaaatattattgaacac |
30384063 |
T |
|
| Q |
101 |
ttgtagagaagaatgaatggttctatgatcaatcaaaggagaacatgctccaagccatgtattcatcactctactaatcatagcttttgcaaaataagca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384064 |
ttgcagagaagaatgaatggttctatgatcaatcaaaggagaacatgctccaagccatgtattcatcactctactaatcatagcttttgcaaaataagca |
30384163 |
T |
|
| Q |
201 |
acaacacgttcagcacatgatgttttgtaaggtgaagctaattgtgttaactctagtaacattctatgagcttcaccatgattttcaactgaaattgcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384164 |
acaacacgttcagcacatgatgttttgtaaggtgaagctaattgtgttaactctagtaacattctatgagcttcaccatgattttcaactgaaattgcca |
30384263 |
T |
|
| Q |
301 |
ctgcacattccattagaagggttatcaaattcaacccttgatcacattcataaccactattactattatggttttgaattaaatctgatgtgtttgtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384264 |
ctgcacattccattagaagggttatcaaattcaacccttgatcacattcataaccactattactattatggttttgaattaaatctgatgtgtttgtttg |
30384363 |
T |
|
| Q |
401 |
aatttgttgaagattattgtaactattattatcagaagtgttctgtggtaagtgatcttcaaaaaagtgtttagtaatgtgttcaacccaat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
30384364 |
aatttgttgaagattattgtaactattattatcagaagtgttttgtggtaagtgatcttcaacaaagtgtttagtaaagtgttcaacccaat |
30384455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University