View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_15 (Length: 493)

Name: NF18309_low_15
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_15
NF18309_low_15
[»] chr2 (14 HSPs)
chr2 (23-480)||(11103953-11104410)
chr2 (163-373)||(11095634-11095844)
chr2 (169-368)||(11145245-11145444)
chr2 (169-334)||(11149179-11149344)
chr2 (164-334)||(11136941-11137111)
chr2 (169-367)||(11110094-11110292)
chr2 (245-371)||(11171246-11171372)
chr2 (169-367)||(11155562-11155760)
chr2 (170-367)||(11118099-11118296)
chr2 (171-282)||(11191956-11192067)
chr2 (302-368)||(11177309-11177375)
chr2 (252-334)||(10794028-10794110)
chr2 (444-480)||(11097351-11097387)
chr2 (176-272)||(11200121-11200217)
[»] chr4 (1 HSPs)
chr4 (107-144)||(51906708-51906745)


Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 23 - 480
Target Start/End: Original strand, 11103953 - 11104410
Alignment:
Q  23 cacagactctaagaacaattataatattcgtaaagactgaatttaaataaaaaactatcacggattaaaatcaaaatatactagaaatgtaaggaacaaa 122  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  11103953 cacagactctaagaacaattataatattcgtaaagactaaatttaaataaaaaactatcacgtattaaaataaaaatatactagaaatgtaaggaacaaa 11104052  T
Q  123 atcatatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104053 atcatatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtga 11104152  T
Q  223 acaagatgcatttccaaacagaaactcattaagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgt 322  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11104153 acaagatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgt 11104252  T
Q  323 gctgatattcttactattgcagctgaagtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatatttgcttctcaaata 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11104253 gctgatattcttactattgcagctgaagtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatttttgcttctcaaata 11104352  T
Q  423 tccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104353 tccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatg 11104410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 163 - 373
Target Start/End: Original strand, 11095634 - 11095844
Alignment:
Q  163 tttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttg 262  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| || || ||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  11095634 tttgtgacagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttg 11095733  T
Q  263 gatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattc 362  Q
    |||||||| || ||||||||||||||||||||| | ||||||||   ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||    
T  11095734 gatgttgtaaaccaaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattcttactattgcagctcaagtagcttctgttc 11095833  T
Q  363 tggtatgtttt 373  Q
    |||||||||||    
T  11095834 tggtatgtttt 11095844  T

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Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 169 - 368
Target Start/End: Original strand, 11145245 - 11145444
Alignment:
Q  169 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 268  Q
    |||||| ||||||| ||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11145245 acagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgtt 11145344  T
Q  269 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtat 368  Q
    |||||||||||||| |||||||| ||| | |  || |||||||| ||||||||||||||||||||| || |||| |||||| |||| ||||  |||||||    
T  11145345 gtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgctgaattatcatctacactggtat 11145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 169 - 334
Target Start/End: Original strand, 11149179 - 11149344
Alignment:
Q  169 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 268  Q
    |||||| ||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11149179 acagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgtt 11149278  T
Q  269 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 334  Q
    |||||||||||||| ||||| || ||| | |  ||||||||||| |||||||| ||||||||||||    
T  11149279 gtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattctt 11149344  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 11136941 - 11137111
Alignment:
Q  164 ttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttgg 263  Q
    |||| |||||| ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |  |||||  || |||||||||    
T  11136941 ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttgg 11137040  T
Q  264 atgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 334  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||| |||||||||||||||||||||    
T  11137041 atgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattctt 11137111  T

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Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 367
Target Start/End: Original strand, 11110094 - 11110292
Alignment:
Q  169 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 268  Q
    |||||| ||||||| ||||||||||||||| ||||| |  || |||||||||||||||||||| |||||||| |  ||||| |||||||| |||||||||    
T  11110094 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 11110193  T
Q  269 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 367  Q
     | ||||||||||||||   ||| ||| |||  || ||||| |  |||||||||||||||||||||||  ||||  ||| | |||||||| ||||||||    
T  11110194 atcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcgtctggaatatcttctgttctggta 11110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 371
Target Start/End: Original strand, 11171246 - 11171372
Alignment:
Q  245 aactcattaagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcag 344  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||| ||| | |  ||||||||||||||||||||||||||||||||| || |||| |    
T  11171246 aactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 11171345  T
Q  345 ctgaagtatcttctattctggtatgtt 371  Q
    ||||| | || ||| ||||||||||||    
T  11171346 ctgaaatttcctctgttctggtatgtt 11171372  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 367
Target Start/End: Original strand, 11155562 - 11155760
Alignment:
Q  169 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 268  Q
    |||||| |||||||  || |||||||||||||| |||| ||| || || || |||||| | || |||||||| |  ||||| ||||||||||||||||||    
T  11155562 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 11155661  T
Q  269 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 367  Q
    || ||||| ||||| || ||  | |||   |  ||||||||||| ||||||||||||||||||||| || |||| ||| ||| ||| ||| ||||||||    
T  11155662 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgctcaagcatcctctgttctggta 11155760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 367
Target Start/End: Original strand, 11118099 - 11118296
Alignment:
Q  170 cagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttg 269  Q
    ||||| ||||||| ||||||||||||||| || |||  ||| |||| |||||||||||||||   |||||| | |||||| |||||| | |||||||||     
T  11118099 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 11118198  T
Q  270 tgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 367  Q
    | ||||| || || || |  || ||| |||  |||||||| |  |||||||||||||||||||| ||  ||||||||| |||||||||  ||||||||    
T  11118199 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatcttcagttctggta 11118296  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 11192067 - 11191956
Alignment:
Q  171 agggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgt 270  Q
    |||| ||||||| |||| | ||||||||  || ||||||| || |||||||| ||||  || || ||||| ||||||||| |||||||||||||| ||||    
T  11192067 agggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt 11191968  T
Q  271 gaatcaaatcaa 282  Q
    ||||||||||||    
T  11191967 gaatcaaatcaa 11191956  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 11177309 - 11177375
Alignment:
Q  302 tgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtat 368  Q
    ||||||||||||||||||||||||||||||||| |  || | |||||| ||||||||  ||||||||    
T  11177309 tgtcctaacactgtttcttgtgctgatattcttgccctttctgctgaaatatcttctgatctggtat 11177375  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 10794110 - 10794028
Alignment:
Q  252 taagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 334  Q
    ||||||||||| | ||||||||||  ||||||||||  || ||| |||  || ||||| || |||||||||||||||||||||    
T  10794110 taagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattctt 10794028  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 11097351 - 11097387
Alignment:
Q  444 atatattgatctatgaacagggaggaggtccctcatg 480  Q
    |||||||| | ||||||||||||||||||||||||||    
T  11097351 atatattggtttatgaacagggaggaggtccctcatg 11097387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 11200121 - 11200217
Alignment:
Q  176 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgtga 272  Q
    ||||||| ||| |||||| |||||||||| |  ||||| || || |||||| | || |||||||| |  |||||  |||||||||||||||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgtga 11200217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 51906708 - 51906745
Alignment:
Q  107 aaatgtaaggaacaaaatcatatttaaccctaaaataa 144  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  51906708 aaatgtagggaccaaaatcatatttaaccctaaaataa 51906745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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