View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_16 (Length: 490)
Name: NF18309_low_16
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 8413407 - 8413138
Alignment:
| Q |
16 |
gcggtggcggtggcggtggcggttttgatcaaacatgattttacttaataatttaaaggtaattaatgcatttgattgaatccttttgttgttaatcatt |
115 |
Q |
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| T |
8413407 |
gcggtggcggtggcggtggcggttttgatcaaacatgattttacttaataatttaaaggtaattaatgcattttattgaatccttttgttgttaataatt |
8413308 |
T |
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| Q |
116 |
gatgtctgtatattgataattg-ttgatttagtttttggaaactgacacgccttcaattagaattgtcagagtgcgaaacttggt-aaagcataatcatg |
213 |
Q |
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| T |
8413307 |
gctgtatgtatattgataattgtttgatttagtttttggacactgacacgccttgaattagaattgtcagagtgcgaaacttggtaaaagcatagtcatg |
8413208 |
T |
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| Q |
214 |
aaaatgaaaggactgaatcaaattaatcattttgttacttaacttatccatctctcagtaatttatttag |
283 |
Q |
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| T |
8413207 |
aaaatgaaaggactgaatcaaattaatcattttgttacttaacttatccatgtctcagtaatttacttag |
8413138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 314 - 446
Target Start/End: Complemental strand, 8413048 - 8412905
Alignment:
| Q |
314 |
taattttaatttaacctaataactaaaagctaattatttgttttacacgaaaaga-----------gaatcacaagtggaggaagacccaagctacactt |
402 |
Q |
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| T |
8413048 |
taattttaatttaacctaataactaaaagctaattatttgttttacacgaaaagaaggggaaaagagaatcacaagtggaggaagacccaagctacactt |
8412949 |
T |
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| Q |
403 |
atatgaagatttctgaatcccaggtctactattatacaccttgc |
446 |
Q |
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| T |
8412948 |
atatgaagatttctgaatcccaggtctactattatacaccttgc |
8412905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8413428 - 8413391
Alignment:
| Q |
1 |
ttcagaaggatcgtcgcggtggcggtggcggtggcggt |
38 |
Q |
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| T |
8413428 |
ttcagaaggatcgtcgcggtggcggtggcggtggcggt |
8413391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 8413119 - 8413076
Alignment:
| Q |
278 |
atttagatgccttttccc-ggatgccacattcattgataatttt |
320 |
Q |
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| T |
8413119 |
atttagatgccttttccccggatgccacattcattgataatttt |
8413076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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