View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_17 (Length: 447)
Name: NF18309_low_17
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 31426855 - 31426518
Alignment:
| Q |
12 |
atcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggttcagaca |
111 |
Q |
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| T |
31426855 |
atcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggtgcagaca |
31426756 |
T |
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| Q |
112 |
cacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaaaggtcttggtcgtcatggtggaaacaaagaagaaaggttt |
211 |
Q |
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| T |
31426755 |
cacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaacggtcttggtcgtcatggtggaaacaaagaagaaaggttt |
31426656 |
T |
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| Q |
212 |
tcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaacttgcaagaaatgaa |
311 |
Q |
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| T |
31426655 |
tcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcacaagaattgtgaataatgtgggagattataacaacttgcaagaaatgaa |
31426556 |
T |
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| Q |
312 |
aatggaatggaagaagnnnnnnngagagtgaaatttgg |
349 |
Q |
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| T |
31426555 |
aatggaatggaagaagaaaaaaagagagtgaaatttgg |
31426518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 342 - 432
Target Start/End: Complemental strand, 31426488 - 31426398
Alignment:
| Q |
342 |
aaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaat |
432 |
Q |
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| T |
31426488 |
aaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaat |
31426398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 7171816 - 7171510
Alignment:
| Q |
12 |
atcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggttcagaca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
7171816 |
atcatcacatgcaaagcaactttgaattcttctgtgatgatgcttttgctcttttggtctgcattgtttaagggttttggtgatggtgatggtgcagaca |
7171717 |
T |
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| Q |
112 |
cacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaaaggtcttggtcgtcatggtggaaacaaagaagaaaggttt |
211 |
Q |
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| T |
7171716 |
cacgtgtgatgctgcatttttgggtttgtatctctggctttcttttcttgattggaagaacaatcttg---gtcatggtggaaacaaacaagaaa--aat |
7171622 |
T |
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| Q |
212 |
tcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaacttgcaagaaatgaa |
311 |
Q |
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| T |
7171621 |
tcacgtgcaaaactgatcaaagaaatagaagaaatattgaagg---tggtagaagaattgtgaataatgtgggggattataacaacttgcaagaaatgaa |
7171525 |
T |
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| Q |
312 |
aatggaatggaagaa |
326 |
Q |
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| T |
7171524 |
aatggaatggaagaa |
7171510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 7171456 - 7171381
Alignment:
| Q |
341 |
gaaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataact |
416 |
Q |
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||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7171456 |
gaaatgtggcggttcagctgcttggttttctagcttgaccttgactaggtagattcttctaactgattggataact |
7171381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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