View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_2 (Length: 968)

Name: NF18309_low_2
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_2
NF18309_low_2
[»] chr2 (11 HSPs)
chr2 (22-709)||(32785156-32785842)
chr2 (514-731)||(1037536-1037756)
chr2 (25-87)||(32792672-32792734)
chr2 (22-86)||(32799288-32799352)
chr2 (26-85)||(32813476-32813535)
chr2 (22-76)||(28213781-28213835)
chr2 (26-87)||(32310970-32311031)
chr2 (783-833)||(45245229-45245279)
chr2 (25-73)||(32563818-32563866)
chr2 (514-578)||(44575471-44575535)
chr2 (400-470)||(1037409-1037479)
[»] chr6 (12 HSPs)
chr6 (656-954)||(28934833-28935131)
chr6 (190-316)||(6588521-6588647)
chr6 (514-626)||(7119269-7119381)
chr6 (514-626)||(7131747-7131859)
chr6 (643-730)||(12102274-12102361)
chr6 (641-731)||(6423224-6423314)
chr6 (783-840)||(10579881-10579938)
chr6 (643-731)||(11936279-11936367)
chr6 (643-731)||(11948259-11948347)
chr6 (783-824)||(6415880-6415921)
chr6 (640-709)||(6432190-6432259)
chr6 (666-731)||(6585264-6585329)
[»] chr8 (15 HSPs)
chr8 (514-732)||(18315145-18315366)
chr8 (156-311)||(18314842-18314997)
chr8 (516-610)||(32151429-32151523)
chr8 (156-310)||(18318848-18319002)
chr8 (638-732)||(17636400-17636494)
chr8 (666-731)||(17628041-17628106)
chr8 (415-471)||(17636157-17636213)
chr8 (415-474)||(17627819-17627878)
chr8 (641-731)||(27922515-27922605)
chr8 (643-732)||(21235564-21235653)
chr8 (198-243)||(32151732-32151777)
chr8 (783-827)||(44736446-44736490)
chr8 (198-297)||(17635903-17636002)
chr8 (198-305)||(17643197-17643304)
chr8 (660-710)||(34936184-34936234)
[»] chr4 (36 HSPs)
chr4 (514-710)||(1600447-1600646)
chr4 (643-854)||(553363-553574)
chr4 (514-731)||(8186963-8187183)
chr4 (514-731)||(55908600-55908820)
chr4 (514-731)||(1548298-1548516)
chr4 (640-724)||(1519143-1519227)
chr4 (640-731)||(8184031-8184122)
chr4 (783-854)||(12121601-12121672)
chr4 (406-474)||(547193-547261)
chr4 (514-570)||(12121329-12121385)
chr4 (641-731)||(7307867-7307957)
chr4 (551-732)||(1552676-1552860)
chr4 (514-570)||(1489233-1489289)
chr4 (656-691)||(659756-659791)
chr4 (514-740)||(7225755-7225984)
chr4 (664-711)||(12116600-12116647)
chr4 (639-710)||(12121457-12121528)
chr4 (156-238)||(532589-532671)
chr4 (783-833)||(1489505-1489555)
chr4 (783-833)||(1508147-1508197)
chr4 (659-732)||(570357-570430)
chr4 (640-740)||(55505109-55505209)
chr4 (783-903)||(55505249-55505369)
chr4 (528-606)||(558630-558711)
chr4 (657-732)||(1508021-1508096)
chr4 (534-580)||(532344-532390)
chr4 (406-444)||(532493-532531)
chr4 (418-476)||(641190-641248)
chr4 (783-833)||(644736-644786)
chr4 (640-690)||(1489362-1489412)
chr4 (640-710)||(1513408-1513478)
chr4 (783-833)||(1513548-1513598)
chr4 (640-690)||(1537768-1537818)
chr4 (783-833)||(1537911-1537961)
chr4 (783-817)||(8184174-8184208)
chr4 (783-832)||(546819-546868)
[»] scaffold0295 (1 HSPs)
scaffold0295 (514-710)||(496-695)
[»] chr3 (6 HSPs)
chr3 (640-899)||(51113782-51114041)
chr3 (516-618)||(514602-514707)
chr3 (415-472)||(51113544-51113601)
chr3 (640-704)||(51120894-51120958)
chr3 (516-610)||(1657375-1657472)
chr3 (200-237)||(513927-513964)
[»] chr5 (5 HSPs)
chr5 (656-740)||(41901552-41901636)
chr5 (514-731)||(32267482-32267699)
chr5 (641-709)||(41889556-41889624)
chr5 (783-842)||(37937783-37937842)
chr5 (783-842)||(38267700-38267759)
[»] chr1 (6 HSPs)
chr1 (514-607)||(9581199-9581295)
chr1 (514-607)||(9586767-9586863)
chr1 (783-817)||(9580990-9581024)
chr1 (785-827)||(43634090-43634132)
chr1 (192-225)||(9587040-9587073)
chr1 (418-475)||(52082860-52082917)
[»] chr7 (1 HSPs)
chr7 (900-937)||(25645259-25645296)


Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 22 - 709
Target Start/End: Original strand, 32785156 - 32785842
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacattaacactatagtttaaaagttctgaaatcttcctg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||| |||||||    
T  32785156 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaaca------------------ctatagtttaaaagttctgaaagcttcctg 32785237  T
Q  122 aatggaatagaatctctttcaccgtcattgttccaactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttca 221  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  32785238 aatggaatagaatctctttcaccgtcattgttccaactccacaaggttaatcttactggtcattattacatcaacaatcaatcgcttttccacttgttca 32785337  T
Q  222 aaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785338 aaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagt 32785437  T
Q  322 ccgacaaacgtgcaaccttgtttacactcctttg---ct--tctccacttaatgagattagaacggcagacaaaggtacatgtgaaaaaagtgtacaaaa 416  Q
    |||||||||||||||||||||||||||||||| |   ||  ||| |||||||| ||||||||| |||||||||||||||||| | |||||||||||||||    
T  32785438 ccgacaaacgtgcaaccttgtttacactccttaggaactgctcttcacttaataagattagaatggcagacaaaggtacatg-ggaaaaagtgtacaaaa 32785536  T
Q  417 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctc--------------agagatgaaagcatcaggatgttttct 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||    
T  32785537 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttct 32785636  T
Q  503 tctannnnnnnccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacat 602  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785637 tcta-ttttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacat 32785735  T
Q  603 ttgaatttggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatg 702  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32785736 ttgaatttggaccacttttcaagaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 32785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 514 - 731
Target Start/End: Original strand, 1037536 - 1037756
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || |||||   ||||||| |||| ||||||||||||||||    
T  1037536 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaattt 1037635  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| | ||||| |||||| |||||    
T  1037636 agcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactc 1037735  T
Q  711 agtgtgatttcaaagagttgt 731  Q
      | |||| ||||||| ||||    
T  1037736 tatatgatctcaaagaattgt 1037756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 32792672 - 32792734
Alignment:
Q  25 gcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 87  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  32792672 gcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatt 32792734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 32799288 - 32799352
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacat 86  Q
    ||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  32799288 aaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaaacat 32799352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 32813476 - 32813535
Alignment:
Q  26 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaaca 85  Q
    |||||||||||| ||| ||||||| ||||||| |||||||||||||||||| ||||||||    
T  32813476 cataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaaca 32813535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28213781 - 28213835
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacacta 76  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  28213781 aaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 32311031 - 32310970
Alignment:
Q  26 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 87  Q
    |||||||||||| ||| | ||||| ||||||| |||||||||||||||||| ||||||||||    
T  32311031 cataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatt 32310970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 783 - 833
Target Start/End: Original strand, 45245229 - 45245279
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    |||||||| |||||||||||||||||||||||||| | ||||||| |||||    
T  45245229 ggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32563818 - 32563866
Alignment:
Q  25 gcataacagaacattttcatttgttgatatttactgcagccttgcaaca 73  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||    
T  32563818 gcataacagaacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 44575471 - 44575535
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattt 578  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||   ||||| ||||||| |||||    
T  44575471 ccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaattt 44575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 1037409 - 1037479
Alignment:
Q  400 gaaaaaagtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccattt 470  Q
    ||||| |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  ||||||||    
T  1037409 gaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 1037479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 656 - 954
Target Start/End: Complemental strand, 28935131 - 28934833
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctg 755  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28935131 tccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctg 28935032  T
Q  756 ttaaactgcgatcgtgttacnnnnnnnggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatc 855  Q
    |||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28935031 ttaaactgcgatagtgttacaaaaaaaggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatc 28934932  T
Q  856 ctaatttcgtaacctcactagtattaccaaggtcatcattgagaaagaatcttgaacctatcactgattttatgccttcttttaataacatattggttt 954  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934931 ctaatttggtagcctcactagtattaccaaggtcatcattgagaaagaatcttgaacctatcactgattttatgccttcttttaataacatattggttt 28934833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 6588521 - 6588647
Alignment:
Q  190 catcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagct 289  Q
    ||||||||||||||||||||||||||||||||| || |  ||||||||| | |||| || ||||||||  |||| | || || ||||||| || || |||    
T  6588521 catcaacaatcaatcgcttttccacttgttcaacaattgtaagcttctccaggaagtcaacatatttggttgtcgtgaattaaccaatgcaggcattgct 6588620  T
Q  290 tctgctctccgtgagacaccaatattg 316  Q
    |||||||||||||||| ||||| ||||    
T  6588621 tctgctctccgtgagagaccaaaattg 6588647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 7119381 - 7119269
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 610  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7119381 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7119285  T
Q  611 ggcccacttttcaaga 626  Q
     ||||||| |||||||    
T  7119284 agcccactgttcaaga 7119269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 7131859 - 7131747
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 610  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7131859 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7131763  T
Q  611 ggcccacttttcaaga 626  Q
     ||||||| |||||||    
T  7131762 agcccactgttcaaga 7131747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 643 - 730
Target Start/End: Complemental strand, 12102361 - 12102274
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttg 730  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||| |||||||  | |||| ||||  | ||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 731
Target Start/End: Complemental strand, 6423314 - 6423224
Alignment:
Q  641 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    |||||||||| ||  |||||| || |||||||||||||||||| |||||||||||  |||| || |||||  || ||| ||||||||||||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgt 6423224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 10579881 - 10579938
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgatt 840  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| || ||||||||||    
T  10579881 ggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatt 10579938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 643 - 731
Target Start/End: Original strand, 11936279 - 11936367
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    |||||||| ||  ||||||||| ||||||||| ||||||||  |||||||||||||||| || |||||  |  ||| ||||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgt 11936367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 643 - 731
Target Start/End: Original strand, 11948259 - 11948347
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    |||||||| ||  ||||||||| ||||||||| ||||||||  |||||||||||||||| || |||||  |  ||| ||||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgt 11948347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 824
Target Start/End: Complemental strand, 6415921 - 6415880
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagag 824  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  6415921 ggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 709
Target Start/End: Complemental strand, 6432259 - 6432190
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcact 709  Q
    ||||||||||| ||  |||||| ||  ||||||||||||||||| ||||||| ||||| |||||| ||||    
T  6432259 gaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacact 6432190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 731
Target Start/End: Original strand, 6585264 - 6585329
Alignment:
Q  666 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    ||||| |||||||||||| ||||||  ||||| |||||| |||||  |||||| ||||||||||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgt 6585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 514 - 732
Target Start/End: Original strand, 18315145 - 18315366
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaaga---tgttctaagattagacatttgaattt 610  Q
    ||||||||||  | |||||||||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   |||||| |||||||||| ||||| ||    
T  18315145 ccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaactt 18315244  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     || |    |||||||||  |||  | | ||||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  18315245 agctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactc 18315344  T
Q  711 agtgtgatttcaaagagttgtc 732  Q
      |||||| |||||||||||||    
T  18315345 tatgtgatctcaaagagttgtc 18315366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 18314842 - 18314997
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatt 255  Q
    ||||||| ||||||||| |  ||| ||| || | ||||||| ||||||||||||||||||||||||| ||||  ||||||||| ||||  | ||||||||    
T  18314842 aactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatatt 18314941  T
Q  256 tgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaa 311  Q
    | |||||||| ||||| |||| || ||||| |||| |||||||||||||| |||||    
T  18314942 ttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaa 18314997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 516 - 610
Target Start/End: Complemental strand, 32151523 - 32151429
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaattt 610  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||||||| |||||||||||    
T  32151523 aatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaagatgctctgagattaggcatttgaattt 32151429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 18318848 - 18319002
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatt 255  Q
    ||||||| |||||| |||| ||||||||  | |  |||| | ||||||||||| ||||||||||||| |||| |||||||||| |||| ||||||||| |    
T  18318848 aactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatact 18318947  T
Q  256 tgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacacca 310  Q
    ||||||| || ||||| ||||||  ||||| |||||| | |||| ||||| ||||    
T  18318948 tgactgtgatcaaataaccaatgatggtattgcttcttccctccatgagagacca 18319002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 638 - 732
Target Start/End: Original strand, 17636400 - 17636494
Alignment:
Q  638 tcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 732  Q
    ||||||||||||| ||  ||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |   |||||| |||||||||||||    
T  17636400 tcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtc 17636494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 731
Target Start/End: Original strand, 17628041 - 17628106
Alignment:
Q  666 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||| ||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgt 17628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 17636157 - 17636213
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttg 471  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  17636157 aattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccatttg 17636213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 17627819 - 17627878
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 474  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||| | |||| ||||||||    
T  17627819 aattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggct 17627878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 731
Target Start/End: Complemental strand, 27922605 - 27922515
Alignment:
Q  641 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    |||||||||| ||  ||||||| | |||||||||||||||||| ||||||  ||||| |||||||||||   | |||| ||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgt 27922515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 732
Target Start/End: Complemental strand, 21235653 - 21235564
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 732  Q
    |||||||| ||  ||||||||| |||||||||||||||||| ||||| |||||||  | |||| ||||  | ||||||||||||| ||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtc 21235564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 32151777 - 32151732
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaaga 243  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32151777 atcaatcgcttttccacttgttcaacaactggaagcttctcgaaga 32151732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 783 - 827
Target Start/End: Complemental strand, 44736490 - 44736446
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatc 827  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  44736490 ggagtgaaacatgttgtagaaaattgtacacaactaagagagatc 44736446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 17635903 - 17636002
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctct 297  Q
    ||||||| ||| || |||||||||| || | |||| ||||  ||||||||||||||||  | |||||  ||||| ||||||||||||| || ||||||||    
T  17635903 atcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcatattgaattgtcaacaaataaccaatgccggtattgcctctgctct 17636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 17643197 - 17643304
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctct 297  Q
    ||||||||||| || |||||||||| ||||| |||| |||  |||| |||||||||||   |||| || ||||| |||| || ||| | |||||||||||    
T  17643197 atcaatcgcttctcaacttgttcaagaacttaaagcatctagaagaggccatcatattgcgctgtgatgaaataaccaacgctggtgttgcttctgctct 17643296  T
Q  298 ccgtgaga 305  Q
     |||||||    
T  17643297 acgtgaga 17643304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 710
Target Start/End: Original strand, 34936184 - 34936234
Alignment:
Q  660 aaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
    ||||||||||||||| |||||||| ||||||||||||| ||| || |||||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgataaaacactc 34936234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 514 - 710
Target Start/End: Complemental strand, 1600646 - 1600447
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||   |||| |||||| |||||||||||||| ||    
T  1600646 ccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaactt 1600547  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     ||||| | ||||| |||  |||  |   ||||||||||| ||  ||  ||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  1600546 agcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 643 - 854
Target Start/End: Complemental strand, 553574 - 553363
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttat 742  Q
    |||||||||||  || |||||| ||||||||||||||||||  |||||||||||| ||||||||||| | |||||||||||||||||||  ||| ||| |    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  743 gcgcctgttgctgttaaactgcgatcgtgttacnnnnnnnggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 842  Q
    ||  |||||| ||||  | ||   |  ||| ||       |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||  | ||||    
T  553474 gcaactgttgttgttttattgtagtgatgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgt 553375  T
Q  843 gttaaagtgcat 854  Q
    | ||||||||||    
T  553374 gataaagtgcat 553363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 514 - 731
Target Start/End: Original strand, 8186963 - 8187183
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaa---gatgttctaagattagacatttgaattt 610  Q
    ||||||||||  | |||||||||||  |||||||| |||||||||||||||||||||||||| |||| |   |||||| | |||||||  ||||||| ||    
T  8186963 ccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaactt 8187062  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     ||| ||| | ||||| | | || | |  ||||||||||| ||  | ||||||| |||||||||||||||||||||||||||||||| ||| || ||||     
T  8187063 agcctactgtccaagagttgggctctccggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactt 8187162  T
Q  711 agtgtgatttcaaagagttgt 731  Q
      ||  |||||||||||||||    
T  8187163 tatgcaatttcaaagagttgt 8187183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 514 - 731
Target Start/End: Original strand, 55908600 - 55908820
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| |||| ||||||||||||||||    
T  55908600 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaattt 55908699  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| | ||||| |||||| |||||    
T  55908700 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactc 55908799  T
Q  711 agtgtgatttcaaagagttgt 731  Q
      | |||| ||||||| ||||    
T  55908800 tatatgatctcaaagaattgt 55908820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 514 - 731
Target Start/End: Original strand, 1548298 - 1548516
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggc 613  Q
    ||||||||||||| ||||||||||   |||||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||| ||||| || ||    
T  1548298 ccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagc 1548397  T
Q  614 ccacttttcaagaatcgagc-accctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcag 712  Q
     |    || || | |  ||| ||  | || |||||||| ||  ||||||||| ||||||||||||||||||||||||||  |||| |||||| ||||||     
T  1548398 tcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaa 1548497  T
Q  713 tgtgatttcaaagagttgt 731  Q
    |||||| ||||||||||||    
T  1548498 tgtgatctcaaagagttgt 1548516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 640 - 724
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaa 724  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||  |||||| |||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 640 - 731
Target Start/End: Original strand, 8184031 - 8184122
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    ||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||| |||  |||||||  ||  || ||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgt 8184122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 783 - 854
Target Start/End: Original strand, 12121601 - 12121672
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 854  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  12121601 ggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 12121672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 547261 - 547193
Alignment:
Q  406 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 474  Q
    |||||| | |||||||||||||| | |||||||||||||| ||||||||| |||| |||||||||||||    
T  547261 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggct 547193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 12121329 - 12121385
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 570  Q
    ||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||    
T  12121329 ccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattt 12121385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 641 - 731
Target Start/End: Complemental strand, 7307957 - 7307867
Alignment:
Q  641 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 731  Q
    |||||||||||||  ||||||| | ||||| |||||||||||| |||||  |||||| |||||||||||  || |||| ||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgt 7307867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 551 - 732
Target Start/End: Original strand, 1552676 - 1552860
Alignment:
Q  551 catatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggcccac--ttttcaagaatcga-gcaccctcgaatgaac 647  Q
    |||||| || |||||||||||| || |||||||||||| |||||||||||||||||| || |||||   ||||  ||||  || ||  | | || |||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttggactgaac 1552775  T
Q  648 tttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 732  Q
    ||| ||  ||||||||| || |||||||| |||||||||||||   || | |||||| |||||| |||||| ||||||| |||||    
T  1552776 tttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtc 1552860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 1489233 - 1489289
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 570  Q
    ||||||||||| | ||| ||||||  |||||||||||||||||||||||||||||||    
T  1489233 ccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattt 1489289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 656 - 691
Target Start/End: Complemental strand, 659791 - 659756
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaag 691  Q
    ||||||||||||||||||||||||||||||||||||    
T  659791 tcccaaactagaggtgttgaacttgtcacatacaag 659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 514 - 740
Target Start/End: Original strand, 7225755 - 7225984
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    |||||||| | || ||||||||||||| || | ||||||| | |||||||||  |||||||| |||||   ||||||| |||||||||||||||||| ||    
T  7225755 ccaatttggagctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaactt 7225854  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
      || ||| | ||||| |  |||  |     ||||||||| ||  || | || | ||||| |||||||||||||||||||||||||| ||  ||| |||     
T  7225855 atcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggactt 7225954  T
Q  711 agtgtgatttcaaagagttgtcatggactt 740  Q
     ||||||| ||||||||||||  |||||||    
T  7225955 cgtgtgatatcaaagagttgttgtggactt 7225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 664 - 711
Target Start/End: Original strand, 12116600 - 12116647
Alignment:
Q  664 tagaggtgttgaacttgtcacatacaagagttgacgatgaagcactca 711  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  12116600 tagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactca 12116647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 639 - 710
Target Start/End: Original strand, 12121457 - 12121528
Alignment:
Q  639 cgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||| ||||||  ||||| |||||| |||||    
T  12121457 cgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactc 12121528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 532671 - 532589
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctc 238  Q
    |||||||||||||||||||| ||  |||  | | ||||||| | |||||||||||||||||||||||||| |  |||||||||    
T  532671 aactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 783 - 833
Target Start/End: Original strand, 1489505 - 1489555
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  1489505 ggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttg 1489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 783 - 833
Target Start/End: Original strand, 1508147 - 1508197
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  1508147 ggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttg 1508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 732
Target Start/End: Complemental strand, 570430 - 570357
Alignment:
Q  659 caaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 732  Q
    |||||| |||||||||||||||||| ||||| |||||||  | |||| ||||  | ||||||||||||||||||    
T  570430 caaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtc 570357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 640 - 740
Target Start/End: Original strand, 55505109 - 55505209
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggact 739  Q
    |||||||||||| |   ||| ||||||||||||||||||||||| ||||||  |||||||||| | ||||   |||||  ||||||| ||||| ||||||    
T  55505109 gaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggact 55505208  T
Q  740 t 740  Q
    |    
T  55505209 t 55505209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 783 - 903
Target Start/End: Original strand, 55505249 - 55505369
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttcgtaacctcactagtattac 882  Q
    |||||||| || ||| ||||||| ||||||||||||||||||||| | ||| | | ||||| |||||||||| ||| | | ||   |||| | |||||      
T  55505249 ggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtatttt 55505348  T
Q  883 caaggtcatcattgagaaaga 903  Q
    ||||| |||||||||||||||    
T  55505349 caaggccatcattgagaaaga 55505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 606
Target Start/End: Complemental strand, 558711 - 558630
Alignment:
Q  528 cttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttga 606  Q
    |||||||||| ||||||  |||| ||||| ||| |||||||||||||  |||||||   ||||||||| |||||||||||||    
T  558711 cttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttctaacattagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 732
Target Start/End: Original strand, 1508021 - 1508096
Alignment:
Q  657 cccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 732  Q
    ||||||||||| |||||||||||||||||||| |  ||||| |||||| ||||  |||| || |||||| ||||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtc 1508096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 534 - 580
Target Start/End: Complemental strand, 532390 - 532344
Alignment:
Q  534 ttgagctattgctataacatatctgaagaaggtatttgtcaattttt 580  Q
    ||||||||||| |||||||||||| |||||||||||| |||| ||||    
T  532390 ttgagctattgttataacatatctaaagaaggtatttatcaagtttt 532344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 532531 - 532493
Alignment:
Q  406 agtgtacaaaattctaattctttgatggattttgttgta 444  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  532531 agtgtacaacattctaattctttgaaggattttgttgta 532493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 641248 - 641190
Alignment:
Q  418 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctca 476  Q
    ||||||||||| || ||||||||||||  || ||| ||||||| |||||||||||||||    
T  641248 tctaattctttcatagattttgttgtacgccgtcagttaaagtgtctccatttggctca 641190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 833
Target Start/End: Complemental strand, 644786 - 644736
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||| |||||    
T  644786 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttg 644736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 690
Target Start/End: Original strand, 1489362 - 1489412
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 690  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1489362 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 710
Target Start/End: Original strand, 1513408 - 1513478
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||  |||||  ||||| |||||| |||||    
T  1513408 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactc 1513478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 833
Target Start/End: Original strand, 1513548 - 1513598
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    |||||||||| |||| ||||||| ||||||||||| ||||||||| |||||    
T  1513548 ggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttg 1513598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 690
Target Start/End: Original strand, 1537768 - 1537818
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 690  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1537768 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 833
Target Start/End: Original strand, 1537911 - 1537961
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 833  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||    
T  1537911 ggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttg 1537961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 817
Target Start/End: Original strand, 8184174 - 8184208
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaact 817  Q
    ||||||||||||||| |||||||||||||||||||    
T  8184174 ggagtgaagcatgtgctagaaaattgcacacaact 8184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 832
Target Start/End: Complemental strand, 546868 - 546819
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctattt 832  Q
    |||||||| |||||| ||||||| |||||| |||||||||||||| ||||    
T  546868 ggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 514 - 710
Target Start/End: Original strand, 496 - 695
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||| ||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| ||||  |||||||||||||||    
T  496 ccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaattt 595  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||||| || || |||||| |||||    
T  596 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactc 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 899
Target Start/End: Original strand, 51113782 - 51114041
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggact 739  Q
    ||||||||||| || |||||||||| ||||||||  |||||||| ||||||  ||||| |||||| |||||  |||||| || |||||||||  ||| ||    
T  51113782 gaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggct 51113881  T
Q  740 tatgcgcctgttgctgttaaactgcgatcgtgttacnnnnnnnggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgat 839  Q
    | |||  ||||| |||  ||| ||  | | ||| ||       ||||||||||||||||||||||| |||||| |||||||||||||  ||||  | | |    
T  51113882 tttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggt 51113981  T
Q  840 tgtgttaaagtgcatcctaatttcgtaacctcactagtattaccaaggtcatcattgaga 899  Q
    ||| ||||||||||| ||||||| ||  ||||| |  ||||  ||||| |||||||||||    
T  51113982 tgttttaaagtgcatgctaattttgttgcctcaatgatattttcaaggccatcattgaga 51114041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 516 - 618
Target Start/End: Original strand, 514602 - 514707
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaatttgg 612  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||  || |||| |||||| |||||   ||||| ||||||||||| |||||||| || |    
T  514602 aatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttag 514701  T
Q  613 cccact 618  Q
    ||||||    
T  514702 cccact 514707  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 51113544 - 51113601
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttgg 472  Q
    ||||||||||||||||||| |||||||||||  || |||||||||| |||||| ||||    
T  51113544 aattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttgg 51113601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 51120894 - 51120958
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaa 704  Q
    ||||||||||| ||  || |||| | ||||||||||||||||| |||||||||||||| ||||||    
T  51120894 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 51120958  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 610
Target Start/End: Complemental strand, 1657472 - 1657375
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||| || ||||||||||||||| ||||| |  ||||||||||||||||||||  |||  |||||   | ||||| ||| |||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaattt 1657375  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 513927 - 513964
Alignment:
Q  200 caatcgcttttccacttgttcaaaaacttgaagcttct 237  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  513927 caatcgcttttccacttgttcaaaaactgtaagcttct 513964  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 656 - 740
Target Start/End: Original strand, 41901552 - 41901636
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggactt 740  Q
    ||||||||| |||||||||||||||||| |||||| |||||| |||||||||||   | |||| ||||||||||||  |||||||    
T  41901552 tcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggactt 41901636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 731
Target Start/End: Complemental strand, 32267699 - 32267482
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 610  Q
    |||||||||| || |||||||||||| |||| | |  ||||||||||||||||||   ||||||||||||   ||||| ||| |||||||||||||| ||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 710  Q
      |||| | ||||| | |   | | |    |||||||||| ||  ||||||| | ||||| |||||||||||||| |||| |||||| |||||||||||     
T  32267599 atcccagtgttcaacagt---gaaactagaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactt 32267503  T
Q  711 agtgtgatttcaaagagttgt 731  Q
      | |||| ||||||||||||    
T  32267502 tatatgatctcaaagagttgt 32267482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 641 - 709
Target Start/End: Original strand, 41889556 - 41889624
Alignment:
Q  641 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagagttgacgatgaagcact 709  Q
    |||||||||||||  ||||||| | |||||||||||||| ||| |||||| |||||| |||||| ||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacact 41889624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 842
Target Start/End: Complemental strand, 37937842 - 37937783
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 842  Q
    ||||||| |||||||||  ||||||||||  |||| ||||||||| ||||||||||||||    
T  37937842 ggagtgatgcatgtggtcaaaaattgcaccaaactcagagagatcaatttggatgattgt 37937783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 842
Target Start/End: Original strand, 38267700 - 38267759
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 842  Q
    ||||||| |||||||||  |||| |||||| |||| ||||||||| ||||||||||||||    
T  38267700 ggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttggatgattgt 38267759  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 9581295 - 9581199
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 607  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9581295 ccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatgttgtcagattagacatttgaa 9581199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 9586863 - 9586767
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 607  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9586863 ccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatgttgtcagattagacatttgaa 9586767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 817
Target Start/End: Complemental strand, 9581024 - 9580990
Alignment:
Q  783 ggagtgaagcatgtggtagaaaattgcacacaact 817  Q
    |||||||||| ||||||||||||||||||||||||    
T  9581024 ggagtgaagcgtgtggtagaaaattgcacacaact 9580990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 785 - 827
Target Start/End: Complemental strand, 43634132 - 43634090
Alignment:
Q  785 agtgaagcatgtggtagaaaattgcacacaactaagagagatc 827  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||    
T  43634132 agtgaagcacgtgttagaaaattgcagacaactaagagagatc 43634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 9587073 - 9587040
Alignment:
Q  192 tcaacaatcaatcgcttttccacttgttcaaaaa 225  Q
    ||||||| ||||||||||||||||||||||||||    
T  9587073 tcaacaaccaatcgcttttccacttgttcaaaaa 9587040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 52082917 - 52082860
Alignment:
Q  418 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctc 475  Q
    |||||||||||| |||| |||||||||  ||||||| | |||| ||||||||||||||    
T  52082917 tctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctc 52082860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 900 - 937
Target Start/End: Original strand, 25645259 - 25645296
Alignment:
Q  900 aagaatcttgaacctatcactgattttatgccttcttt 937  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  25645259 aagaatcttgaacctatcactgattctatgtcttcttt 25645296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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