View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18309_low_20 (Length: 418)
Name: NF18309_low_20
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_20 |
 | |
|
| [»] scaffold0294 (2 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 25568461 - 25568100
Alignment:
| Q |
17 |
cttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnn-tatcaaacaaatatgacccaagcacttctagagctagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568461 |
cttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttacccccccctatcaaacaaatatgacccaagcacttctagagctagc |
25568362 |
T |
|
| Q |
116 |
ggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568361 |
ggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctttagggcttgcttgcttgaatgcatgccagctaaaaagctcaattg |
25568262 |
T |
|
| Q |
216 |
attcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568261 |
attcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccga |
25568162 |
T |
|
| Q |
316 |
accaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568161 |
accaaaccattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
25568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 4322697 - 4322996
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||| || ||||||| |||||||||| | |||||| | ||||| || |
|
|
| T |
4322697 |
tatcaaacaaataggacccaaggacttcaagagctagcggcaatctcccagaatactgaactacatttgtggaaatttctgaaaaatctttgctaggcct |
4322796 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||| || |
|
|
| T |
4322797 |
cgcttgcttgaatgcatgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttgtcaaccctatttcctctaagtata |
4322896 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| | |||||||||| ||||||| |||||||||||| | | |||| |||| || || ||||||||||||||| | || |||| | |||||||||| |||| |
|
|
| T |
4322897 |
tgcttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcacatcgtcaa |
4322996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 4126032 - 4126331
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||| | || ||||||||| |||||||||| | ||||||||||||| || |
|
|
| T |
4126032 |
tatcaaacaaataggatccaaggacttcaagagctagtggcaatcccccagaatatttaactacatttctagaaatttcagaataatcatctctaggact |
4126131 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
| ||||||||| |||||||| |||||||| |||| |||||||||||| ||||||||||||| ||||||||| |||||||||| |||| ||| || |
|
|
| T |
4126132 |
cgtttgcttgaaagcatgccaactaaaaagttcaagagattcactttcatccatttctttcattatgtatattttgtcaactctatcccctcgaagtata |
4126231 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| | |||| || || ||||||| ||||||||| || | | |||| |||| || || ||||||||||||||| | ||| |||||| |||||||||| |||| |
|
|
| T |
4126232 |
tgcttatccctggtcgtgatgattattctactccctggagcaaaccatttacaacttccacacaaagcattgagttggtccaatttattcacatcgtcaa |
4126331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 377
Target Start/End: Complemental strand, 4358817 - 4358518
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||| || ||||||| |||||||||||| |||||| |||||||| || |
|
|
| T |
4358817 |
tatcaaacaaataagacccaaggacttcaagagctagtggcaatcccgcagaatacttaactacatttttggaaatttcagaaaaatcttctctaggcct |
4358718 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|| ||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| | |||||||| || |
|
|
| T |
4358717 |
tgtttgcttgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttatcaacttgtttccctctaagtata |
4358618 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| | |||| ||||| ||||||| |||||||| || | | |||| |||| || || ||||||||||||||| | ||| |||||| |||| ||||| |||| |
|
|
| T |
4358617 |
tgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttagttggtccaatttattgacatcgtcaa |
4358518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 377
Target Start/End: Complemental strand, 4343346 - 4343050
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| |||||||| || |||||| || | ||||| |||||||||||| |||||| ||||||||||| | |
|
|
| T |
4343346 |
tcaaacaaataggacccaaggacttcaagagctagaggcaatcccgcacaatacttaact-catttttggaaatttcagaaaaatcttctctagggctcg |
4343248 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
279 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||| || ||| | |||||||| || | |
|
|
| T |
4343247 |
ttagcttgaatgcatgccaactaaaaagctcaagagattcacttccatccatttctttcattatgtatattttgtcgacttgtttccctctaagtatatg |
4343148 |
T |
|
| Q |
280 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| |||| || || ||||||| ||||||||| || | | |||| ||| ||||| ||||||||||||||| | |||||||||| |||||||||| |||| |
|
|
| T |
4343147 |
cttatccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatttattcacatcgtcaa |
4343050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 78 - 341
Target Start/End: Complemental strand, 4333959 - 4333696
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||||| || ||||||||||||||||||| |||||| ||| | || || |
|
|
| T |
4333959 |
tatcaaacaaataggacccgaggacttcaagagctagcggtaatcccccagaatacttaacaacatttctggaaatttcagaaaaatcttctgtgggact |
4333860 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
| |||||||||||||||| | ||||||||||||| |||||||||||| |||||||||||||| |||| ||| |||||||||| | ||| || || |
|
|
| T |
4333859 |
cgtttgcttgaatgcatgcaaactaaaaagctcaagagattcactttcatccatttctttcattgagtatgttttgtcaactctatcccttctcagtata |
4333760 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacaca |
341 |
Q |
| |
|
| | |||| ||||| || |||| ||||||||| || | | |||| |||| ||||| |||||||| |
|
|
| T |
4333759 |
tgcttatccctagttgtaatgattattctactcccaggagcaaaccatttacgacttccacaca |
4333696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 377
Target Start/End: Complemental strand, 4351636 - 4351337
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||| |||||||| |||| || ||||||| |||||||||| | |||||| ||| | || || |
|
|
| T |
4351636 |
tatcaaacaagtaggacccaaggacttcaagagctagcggcaaccctccagagtacttaactacatttatggaaatttcggaaaaatcttctttgggact |
4351537 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||| |||||| | |||||| | | ||||||| || |
|
|
| T |
4351536 |
cttttgcttgaatgcatgccaactaaaacgctcaagagattcactttcattcatttctttcatttcgtatatcttgtcaacttttttcgctctaagtata |
4351437 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| |||||| || || ||||||| ||||||||| || | | |||| |||| || || ||||||||||| ||| | ||| |||||| |||||||||| |||| |
|
|
| T |
4351436 |
tccatatccctggttgtgatgattattctactcccaggagcaaaccatttacaacttccacacaaagtattaagttggtccaatttattcacatcgtcaa |
4351337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 6756752 - 6756585
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
275 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||| |||||| ||||||||| ||| || | ||||||||||||||| |||||||| |
|
|
| T |
6756752 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcgctttcatccatttcttttatttcataaacttgatcaactctataagatctaagaa |
6756653 |
T |
|
| Q |
276 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaa |
343 |
Q |
| |
|
||| ||||||| || ||||||| |||||||||||||| |||||| |||| ||| | |||||||||| |
|
|
| T |
6756652 |
gattcctatctcttgttgtgatgattattctactacccggaccaaaccattcacggcttccacacaaa |
6756585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 326
Target Start/End: Original strand, 4135377 - 4135624
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| ||||| | ||| ||| |||||| | |||||| ||||||||| |||||| | ||||| || || |
|
|
| T |
4135377 |
tatcaaacaagtaggacccaaggacttccagagccagcgggagtcccccacaatactagacaacatttatggaaatttgagcaaattt-tctcttggact |
4135475 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |||||||||||| ||||| | |||| |||||| ||| | |||||||| ||||||| || |
|
|
| T |
4135476 |
cactttcttgaatgcatgccaactaaaaagctcaagagattcactttcatctatttcctccattatgtatacttggttaactctatcccctctaattatt |
4135575 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
326 |
Q |
| |
|
| | ||||||| || ||||||| ||||||||| || |||||||| |||| |
|
|
| T |
4135576 |
tgcttatctctggttgtgatgattattctactccctgaaccaaaccatt |
4135624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 377
Target Start/End: Complemental strand, 6649361 - 6649141
Alignment:
| Q |
157 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatca |
256 |
Q |
| |
|
||||||||| | | |||| |||| ||| |||||||||||||| || |||||||||| |||||||| || | |||||||| || || || | || |||| |
|
|
| T |
6649361 |
agcaaaatcttttgtaggacttggttgattgaatgcatgccaactgaaaagctcaagagattcactatctcccatttcttctatagtatacacttcatca |
6649262 |
T |
|
| Q |
257 |
actctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgat |
356 |
Q |
| |
|
|||| | | |||||||| | ||||||||| || ||||||| |||||||| |||| |||||| |||| ||| | |||||||||||| || ||||| | |
|
|
| T |
6649261 |
actcgacacgatctaagaagatgcatatctctcgttgtgatgataattctactccccggaccaaaccattcacggcttccacacaaagcctttaattggt |
6649162 |
T |
|
| Q |
357 |
ccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
6649161 |
ccaattcattcacatcatcaa |
6649141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 377
Target Start/End: Complemental strand, 6751134 - 6750933
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
275 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||||||||| ||||||||| |||| || | ||||||||| || || | |||||| |
|
|
| T |
6751134 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcactttcgttcatttcttttattgcatacacttgatcaaccttacataatgtaagaa |
6751035 |
T |
|
| Q |
276 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
| ||||| ||| || ||||||| ||||||||| || | |||||| |||| ||| | |||||||||||| || | ||| |||||| |||||||||||| |
|
|
| T |
6751034 |
gatccatatttcttgttgtgatgattattctactccctggaccaaaccattcacggcttccacacaaagcttttagttggtccaattcattcacatcatc |
6750935 |
T |
|
| Q |
376 |
aa |
377 |
Q |
| |
|
|| |
|
|
| T |
6750934 |
aa |
6750933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 7888556 - 7888638
Alignment:
| Q |
293 |
gtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
||||||| ||||||||| ||| |||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7888556 |
gtgatgagtattctacttcccttaccaaaccattttcgatctccacacaaagcattcaattgatccaatttattcacatcatc |
7888638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 377
Target Start/End: Original strand, 6624109 - 6624310
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
275 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||| ||| |||||||| ||||| || | | | ||||||||| | ||||||| |
|
|
| T |
6624109 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcactctcatccatttcttcaattgtatacactaggtcaactctagacgacctaagaa |
6624208 |
T |
|
| Q |
276 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
| |||||| || || ||||||| |||||||| |||| |||||| |||| ||| | |||||||||||| || | ||| |||||| |||||||||||| |
|
|
| T |
6624209 |
gatgcatatcccttgttgtgatgataattctactccccggaccaaaccattcacggcttccacacaaagcctttagttggtccaattcattcacatcatc |
6624308 |
T |
|
| Q |
376 |
aa |
377 |
Q |
| |
|
|| |
|
|
| T |
6624309 |
aa |
6624310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 6726314 - 6726157
Alignment:
| Q |
79 |
atcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggctt |
178 |
Q |
| |
|
|||| ||||||||||||||| ||||| || ||||| |||||||| |||||||| |||| |||| | | ||| || ||||||||| ||| | || ||| |
|
|
| T |
6726314 |
atcagacaaatatgacccaatgacttcaagtgctagtggcaatcccccagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttggactt |
6726215 |
T |
|
| Q |
179 |
gcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
236 |
Q |
| |
|
| |||||||||||||||||| || ||||||| | |||||||||||| |||||||| |
|
|
| T |
6726214 |
gattgcttgaatgcatgccaactgaaaagcttgagagattcactttcatccatttctt |
6726157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 377
Target Start/End: Original strand, 6535313 - 6535533
Alignment:
| Q |
157 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatca |
256 |
Q |
| |
|
||||||||| ||| | || |||| || ||||||||||||||| || ||||| ||| | |||||||||| |||||||| ||| | || | ||||||| |
|
|
| T |
6535313 |
agcaaaatcttctatcggacttggtttcttgaatgcatgccaactgaaaagagcaagagcttcactttcatccatttcttctattttatacacttgatca |
6535412 |
T |
|
| Q |
257 |
actctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgat |
356 |
Q |
| |
|
||||| || |||||||| | |||||| || || ||||||| ||||||||| ||||||||||| |||| || | |||||||||||| || | ||| | |
|
|
| T |
6535413 |
actctgcatgatctaagaagatgcatatcccttgttgtgatgattattctactccccgaaccaaaccattctcggcttccacacaaagcctttagttggt |
6535512 |
T |
|
| Q |
357 |
ccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
6535513 |
ccaattcattaacatcatcaa |
6535533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 8413107 - 8412957
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
275 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| | ||||||||||| ||||||||| ||||| || | ||||||||||||| || | |||||| |
|
|
| T |
8413107 |
cttggttgcttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttattgtatacacttgatcaactctacatgatgtaagaa |
8413008 |
T |
|
| Q |
276 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
326 |
Q |
| |
|
| ||| ||||| || ||||||| ||||||||| |||| |||||| |||| |
|
|
| T |
8413007 |
gatgcatctctcttgttgtgatgattattctacttcccggaccaaaccatt |
8412957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 6834358 - 6834289
Alignment:
| Q |
279 |
tcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcatt |
348 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| || |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
6834358 |
tcatatctcttgtcgtgatgattattctacttccggaaccaaaccattcgcgacttccacacaaagcatt |
6834289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 6500033 - 6500077
Alignment:
| Q |
181 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttc |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6500033 |
ttgcttgaatgcatgccagctgaaaagctcaagagattcactttc |
6500077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 377
Target Start/End: Original strand, 6589698 - 6589918
Alignment:
| Q |
157 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatca |
256 |
Q |
| |
|
||||||||| ||| | || |||| ||| |||||||||||||| ||||| |||| || ||||||| ||| |||||||| ||||| || ||||||| | |
|
|
| T |
6589698 |
agcaaaatcttcttttggacttggttgtttgaatgcatgccaactaaacagcttaagtgattcaattttgtccatttcttctattgtatacatttgataa |
6589797 |
T |
|
| Q |
257 |
actctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgat |
356 |
Q |
| |
|
|||| | | |||||||| | ||||||||| || ||||| | ||||||||| |||| |||||| || | ||| | ||||||||||| || | || | |
|
|
| T |
6589798 |
actccacacaatctaagaagatgcatatctcttgttgtgattattattctactccccggaccaaaccaatcacggctaccacacaaagcctttagctgct |
6589897 |
T |
|
| Q |
357 |
ccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
6589898 |
ccaattcattcacatcatcaa |
6589918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 377
Target Start/End: Complemental strand, 6714093 - 6713897
Alignment:
| Q |
181 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttc |
280 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| || ||| ||||||| | ||| || | | ||||||||||| | |||||||| | |
|
|
| T |
6714093 |
ttgcttaaatgcatgccagcaaaaaagctcaagagattccctctcatccatttctactactgtatacactagatcaactctacacgatctaagaagacgc |
6713994 |
T |
|
| Q |
281 |
atatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||||||| || ||||||| || |||||| |||| |||||| |||| || | |||||||||||| || | ||| |||| | ||||||||||||||| |
|
|
| T |
6713993 |
atatctcttgttgtgatgattactctactccccggaccaaaccatttgcggcttccacacaaagcctttagttggtccagtttattcacatcatcaa |
6713897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 6814153 - 6814001
Alignment:
| Q |
84 |
acaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttg |
183 |
Q |
| |
|
||||||| ||||| || ||||| || ||||| |||||||| |||||||| ||| |||| | | || || ||||||||| ||| | || |||| ||| |
|
|
| T |
6814153 |
acaaataggacccgaggacttcaagtgctagtggcaatcccccagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttg |
6814054 |
T |
|
| Q |
184 |
cttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
236 |
Q |
| |
|
||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
6814053 |
cttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
6814001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 6547564 - 6547644
Alignment:
| Q |
157 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttcttt |
237 |
Q |
| |
|
||||||||| ||| | || |||| |||||||||||||||||| || || ||||||| |||||| ||||| ||||||||| |
|
|
| T |
6547564 |
agcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattcaatttcatccatttcttt |
6547644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 6647269 - 6647185
Alignment:
| Q |
177 |
ttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactct |
261 |
Q |
| |
|
||||||| ||||||||| ||| ||||||| |||||||||||||||||| || |||||||| | | ||||| || |||||||| |
|
|
| T |
6647269 |
ttgcttggttgaatgcagcccaattaaaaagttcaattgattcactttcatccaattctttcactttatatatatggtcaactct |
6647185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 6794731 - 6794671
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
236 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
6794731 |
cttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
6794671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 36215487 - 36215786
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| ||| | | ||||||||||||| |||||| ||||||||| |||||||||| ||| | || || |
|
|
| T |
36215487 |
tatcaaacaaatatgacccaaggacttccagagctaacggtagttgcccagaatactcaactacattgctggaaattccagcaaaatcttctttgggcct |
36215586 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| |||||||| || |
|
|
| T |
36215587 |
cacttgcttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattgcgtatacttggtcaactctattccctctaagtata |
36215686 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| | |||||||||| ||||||| ||||||||| ||| |||||| |||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
36215687 |
tgcctatctctagttgtgatgattattctactccccacaccaaaccattgacgacttccacacaaagcattaaattgatccaatgtactcacgtcatcaa |
36215786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 34727537 - 34727631
Alignment:
| Q |
283 |
atctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||||| || ||||| | ||||||||| || |||||| |||| | ||| ||||||||||||||||||||| |||| | |||||||||| |||| |
|
|
| T |
34727537 |
atctcttgtagtgatcattattctacttccttcaccaaaccattcatgacttccacacaaagcattcaattggtccactttattcacatcgtcaa |
34727631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 18929291 - 18929231
Alignment:
| Q |
181 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
18929291 |
ttgcttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcatt |
18929231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 34727435 - 34727495
Alignment:
| Q |
181 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
34727435 |
ttgcttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcatt |
34727495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 80 - 377
Target Start/End: Complemental strand, 5395448 - 5395151
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||||| ||||| || || | |
|
|
| T |
5395448 |
tcaaacaaatgtgatccaaggacttccagagctagtggcaatcccccagaatactcaactacatttcttgaaatttctgcaaaatcttctcttggactcg |
5395349 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
279 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||| |||| ||||| |||||||||| |||||||| ||||| |
|
|
| T |
5395348 |
cttgcttgaatgcatgccaactaaagagctcaattgattcgcttccgtccatttctttcattttgtaaatttggtcaactctattacctctaagtatgtt |
5395249 |
T |
|
| Q |
280 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||||||||| | ||||||| |||||| || || ||||||| || | ||||| ||||||||| ||||| | ||| || ||||||||||||||||||| |
|
|
| T |
5395248 |
catatctctacttgtgatgattattctgctccctgaaccaagccaattacgacttccacacaatgcatttagttgttcaaatgtattcacatcatcaa |
5395151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 5075326 - 5075625
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | ||||||||| |||||| |||||||||| ||| |||| || |
|
|
| T |
5075326 |
tatcaaacaaatatgacccaatgacttgtagagctagcggcaatcccccagaatactccactacatttcttgaaattccagcaaaatcttctataggact |
5075425 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || | | ||| |||||||||| |||||||| || |
|
|
| T |
5075426 |
tgcttgtttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattttgcacacttggtcaactctattccctctaagtata |
5075525 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| |||||| || || ||||| | ||||||||| || |||| || |||| |||| ||| ||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
5075526 |
tgcatatccctggttgtgataattattctactccctgaactaagccatttacgatttccgcacaaagcattcaattgctccaattcactcacatcatcaa |
5075625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 5148554 - 5148853
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||| ||||| ||||||| ||||| ||||||||||||| || || ||||||||| || ||||||| ||| |||||||||| |||||||| || |
|
|
| T |
5148554 |
tatcaaataaatacgacccaataacttccagagctagcggcagtcgccccaaatactcaactatccttctggatattccagcaaaatcttctctaggact |
5148653 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| |||||| || |||||||||| ||||| || || |
|
|
| T |
5148654 |
cgcttgcttgaatgcatgccaactaaaaagcataattgattcaccttcatccatttctttcattttgtatacatggtcaactctattccctctcagtata |
5148753 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| |||||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
5148754 |
tgcatatctctagttgtgataattattctacttcccgagccaaaccattgacgacttccacacaaagcagtcaattgatccaacgtactcacatcatcaa |
5148853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 78 - 377
Target Start/End: Original strand, 5183547 - 5183846
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||| |||||||| | |||||||| | |
|
|
| T |
5183547 |
tatcaaacaaatatgatccaaggacttccagagctagtggcaatcccccagaatactcaactacatttcttgaaattccagcaaaaccttctctaggacc |
5183646 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||| |||| | ||| |||||||||| |||||||| || |
|
|
| T |
5183647 |
tgcttgcttgaatgcatgccaactaaatagctcaattgattcgctttcatccattattttcattttgtaaacttggtcaactctattacctctaagtatt |
5183746 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||||| |||||| ||||||| |||||| || || | ||||| || || | ||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
5183747 |
ttcatatttctagttgtgatgattattctgctccctggaccaagccaaatactccttccacacaaagcattcagttggtcaaatgtattcacatcatcaa |
5183846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 25 - 364
Target Start/End: Original strand, 5068617 - 5068955
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | ||||||||||| |||||||||||||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
5068617 |
ttaggaattcttttgagtttgtccaatacacttttccattctgttacctctc-tatcaaacaaatatgacccaaggacttccaaagctagtggcaatccc |
5068715 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcacttt |
224 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||| | | |||| | |||||||||||||| ||||| ||||| |||| |||||||||||||| |
|
|
| T |
5068716 |
ccagaatactcaacgacctttctggaaattgcagcaaaatcttttgtaggacccgcttgcttgaatgcgtgccaactaaatagcttaattgattcacttt |
5068815 |
T |
|
| Q |
225 |
cacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagca |
324 |
Q |
| |
|
|| ||| | ||||||| || ||| || || |||||||| || | ||| || | |||| || |||||||||| ||||||||| ||||||||||| || |
|
|
| T |
5068816 |
catccatgtgtttcattttgaatactttattaactctattcccacgaagtatatgtctatcccttgtggtgatgattattctacttcccgaaccaaacca |
5068915 |
T |
|
| Q |
325 |
ttgacgacgtccacacaaagcattcaattgatccaatgta |
364 |
Q |
| |
|
| ||||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
5068916 |
cttacgacttccacacaaagcatttagttggtccaatgta |
5068955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 377
Target Start/End: Complemental strand, 5424212 - 5423861
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
||||||||||||||||||||||||||| || | | ||||||||| | | || ||||||||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
5424212 |
ttaggaattcttttgagtttttccaatgcacttttccattctgt-aatccctctgtcgaacaaatatgacccaaggacttccaaagctagtggcaatcca |
5424114 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcacttt |
224 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||||||||||| | | |||| || ||||||||||| |||||||| || || ||||||||||||||||||| |
|
|
| T |
5424113 |
ccagaataatcaactacatttctagaaatttcagcaaaatcttttgtaggactcgcttgcttgaaggcatgccaacttaatagctcaattgattcacttt |
5424014 |
T |
|
| Q |
225 |
cacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagca |
324 |
Q |
| |
|
|| ||| | ||||||| || ||| || || ||| |||| || | ||| || | ||||||| || ||||| | ||||||||| ||||||||||| || |
|
|
| T |
5424013 |
catccatgtgtttcattttgaatactttatgaaccctattcccacaaagtatatgtctatctcttgttgtgataattattctactccccgaaccaaacca |
5423914 |
T |
|
| Q |
325 |
ttgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|| | ||| ||||||||||||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
5423913 |
tttatgacttccacacaaagcattcagttggtccaatgtattaacgtcatcaa |
5423861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 25 - 377
Target Start/End: Complemental strand, 5094500 - 5094149
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
|||||||||||||||||||| |||||| || | | ||||||||||| |||| || |||||||||||||| ||||| | ||||| ||||| || |
|
|
| T |
5094500 |
ttaggaattcttttgagtttgtccaatgcacttttccattctgttacctccc-tatcgaataaatatgacccaaggacttccaatgctagtggcaacccc |
5094402 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcacttt |
224 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||| | | |||| || |||||||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
5094401 |
ccagaatactcaactacatttctagaaatttcaacaaaatcgtttgtaggactcgcttgcttgaatgcatgccaactaaataactcaattgattcacttt |
5094302 |
T |
|
| Q |
225 |
cacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagca |
324 |
Q |
| |
|
|| ||| | ||||||| | ||| || || ||| |||| || ||||| || | |||| || ||||| |||| ||||||||| |||| |||||| || |
|
|
| T |
5094301 |
caaccatgtgtttcattttaaatactttattaaccctattcccactaagtatatgtttatcccttgtggtaatgattattctactccccggaccaaacca |
5094202 |
T |
|
| Q |
325 |
ttgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|| | ||| ||| ||||||||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
5094201 |
tttatgacttccgcacaaagcatttagttggtccaatgtattaacatcatcaa |
5094149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 83 - 377
Target Start/End: Original strand, 5356216 - 5356510
Alignment:
| Q |
83 |
aacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgctt |
182 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||| | | |||| ||||||| |
|
|
| T |
5356216 |
aacaaatacgacccaaggacttctagagccagcggtaatcctccagaatactcaactacatttctggaaattccagctaaatcttttgtaggacttgctt |
5356315 |
T |
|
| Q |
183 |
gcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcat |
282 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| ||| ||| | |||||| |||||| | | ||||||| || | ||| || | | |
|
|
| T |
5356316 |
gcttgaatgcatgccaactaaatagctcaattgattcactgtcatccatatgcttcatttcatatattaggttaactctactcccacgaagtatatatct |
5356415 |
T |
|
| Q |
283 |
atctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||||| || ||||| | ||||||||| ||| ||||||| || ||| ||| ||||||||| |||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
5356416 |
atctcttgttgtgataattattctactccccaaaccaaaccaatgatgactgccacacaaaacattcagttggtccaaagtattaacatcatcaa |
5356510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 375
Target Start/End: Complemental strand, 5342101 - 5341804
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
|||||||||||||||| || || ||||| | ||||||||||||||| ||| ||||||| | ||||||| |||||| || ||||| ||||||| || || |
|
|
| T |
5342101 |
tatcaaacaaatatgagcctagaacttccaaagctagcggcaatccaccacaatactcgactacattttcagaaattccaacaaaaccatctcttggact |
5342002 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatg |
277 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||| ||||||| || || |||||||||||| |||| || |||||||||| |||||||| || |
|
|
| T |
5342001 |
tgcttgcttgaacgcatgccaactaaatagctcaagtgattcatttgcatccatttctttcatcacatatacctggtcaactctattccctctaagtata |
5341902 |
T |
|
| Q |
278 |
ttcatatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || |||||||| || | ||| ||||| ||||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
5341901 |
ttcatatctctagttgtgatgactattttactccctgaaccaaaccaattacgctcaccacataaagctttcagttggtccaatgaattcacatcatc |
5341804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 25 - 375
Target Start/End: Complemental strand, 5368919 - 5368570
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
|||||||||||||||||||| |||||| || | | ||||||||||| | ||||||||||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
5368919 |
ttaggaattcttttgagtttgtccaatgcacttttccattctgttatccctc-tgtcaaacaaatatgacccaataacttccaaagctagtggcaatccc |
5368821 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcacttt |
224 |
Q |
| |
|
||||||||||| | ||||||||| ||||||| ||||||||| | ||| || |||||||| ||||||||||| || || ||||||||||||||||||| |
|
|
| T |
5368820 |
ccagaatactccactacatttctagaaattttagcaaaatctttcgcaggactcgcttgcttaaatgcatgccaactgaatagctcaattgattcacttt |
5368721 |
T |
|
| Q |
225 |
cacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagca |
324 |
Q |
| |
|
|| ||| | ||||||| || ||| || || ||| |||| || ||||| || | | ||||| |||||||||| |||||| || ||||||||||| || |
|
|
| T |
5368720 |
catccatgtgtttcattttgaatactttattaaccctattcccactaagtatatgtctgtctcttgtggtgatgattattctgcttcccgaaccaaacca |
5368621 |
T |
|
| Q |
325 |
ttgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
| ||||| ||||||||||||||| | ||| ||||||||||| || ||||| |
|
|
| T |
5368620 |
cttacgacttccacacaaagcatttagttggtccaatgtattaacgtcatc |
5368570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 360
Target Start/End: Complemental strand, 5175271 - 5174991
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||| |||||||||| || |||||| ||||||||||| |||| || ||| | || || |
|
|
| T |
5175271 |
tcaaacaaatagcgcccaagaacttctagagctaacggcaatcccccagaatacttaacaacatttttggaaatttcaacaaattcttctatgggactca |
5175172 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
279 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||| | | ||||| || |||||||||| |||||||| |||| |
|
|
| T |
5175171 |
cttgtttgaatgcatgccaattaaagagctcaattgattcactttcatccatttctttattagagtatactttgtcaactctatcccctctaagtatgtc |
5175072 |
T |
|
| Q |
280 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaa |
360 |
Q |
| |
|
| | | ||| || ||||| | |||||||| || |||||||| || | ||||| |||||||||||||| ||| || ||||| |
|
|
| T |
5175071 |
cttgtttctggtagtgataataattctacttcctgaaccaaaccaattacgacttccacacaaagcatccaactgctccaa |
5174991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 375
Target Start/End: Original strand, 5691654 - 5692003
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
||||||||| ||||||||| | |||||| ||||||||||||||| | ||||| |||| ||||||||| ||||| | |||||| |||||||| |
|
|
| T |
5691654 |
ttaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcc-tgtcaaataaatgtgacccaaggacttccaaagctagtggcaatccc |
5691752 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctaggg-cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactt |
223 |
Q |
| |
|
||||||||||||| ||||||| |||| | | |||||||||| | ||| ||| |||||||||||||| |||||||| ||||| ||||| ||||||||| || |
|
|
| T |
5691753 |
ccagaatactcaactacatttttggacaatgcagcaaaatc-tttcttgggtcttgcttgcttgaaagcatgccaactaaagagctccattgattcattt |
5691851 |
T |
|
| Q |
224 |
tcacacatttctttcattgtgtatatttgatcaact-ctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaag |
322 |
Q |
| |
|
||| ||| ||||||||| |||| ||| | |||| |||| | || |||| || | | |||||||||| || || | ||||||||| || | |||||| |
|
|
| T |
5691852 |
tcattcatctctttcatttcatatacttggtaaactcctatct-ctttaagtatatgcttatctctagttgttataattattctactgccgggaccaaac |
5691950 |
T |
|
| Q |
323 |
cattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
|||| || | |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5691951 |
cattcacaagatccacacaaagcattcaattgatcagatgtactcacatcatc |
5692003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 360
Target Start/End: Complemental strand, 5277098 - 5276818
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||| ||||||||| || |||||| ||||||||||| |||| || ||| | || || |
|
|
| T |
5277098 |
tcaaacaaatagcgcccaagaacttctagagctaacggcaatcccccagaatacataacaacatttttggaaatttcaacaaattcttctatgggactca |
5276999 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
279 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||| ||||| ||||||||| | | ||||| || |||||||||| |||||||| |||| |
|
|
| T |
5276998 |
cttgtttgaatgcatgccaattaaagagctcaattgattcattttcatccatttctttattagagtatactttgtcaactctattccctctaagtatgtc |
5276899 |
T |
|
| Q |
280 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaa |
360 |
Q |
| |
|
| | | ||| || ||||| | |||||||| || |||||||| || | ||||| |||||||||||||| ||| || ||||| |
|
|
| T |
5276898 |
cttgtttctggtagtgataataattctacttcctgaaccaaaccaattacgacttccacacaaagcatccaactgctccaa |
5276818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 5261741 - 5261924
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
177 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||| ||||||| ||| || | || |||||| | |||| || |
|
|
| T |
5261741 |
tatcaaacaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacatttttggtaaatccaataaaatctcttgtaggact |
5261840 |
T |
|
| Q |
178 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactct |
261 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||| | ||||| ||||||||| |||||||| |
|
|
| T |
5261841 |
cgctttcttgaatgcattccaactaaaaagctcaattgattcattttcattcattgttgtcattttgtatattttgtcaactct |
5261924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 377
Target Start/End: Original strand, 5133507 - 5133799
Alignment:
| Q |
85 |
caaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgc |
184 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||| | ||| ||||||||||||||||| | | | || | || | | |
|
|
| T |
5133507 |
caaatatgacccaaggacttctagagctagaggcaatcccccagaatactcaactacgtctctagaaatttcagcaaaatcttttgtgggagtcgcattc |
5133606 |
T |
|
| Q |
185 |
ttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcct-ctaagaatgttcata |
283 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| ||| ||||| || | ||||||| || ||| || |||||||| |||| ||||| || | | | |
|
|
| T |
5133607 |
ttgaatgcatgccaactaaataactcaattgactcattttcatccaagtgtttcattttgaatacctggctaactctat-tcctactaagtatatgcttg |
5133705 |
T |
|
| Q |
284 |
tctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||| || || |||| ||||| ||| || |||||||| |||| || || ||||||||||||||||| ||| |||| ||||| |||||||||| |
|
|
| T |
5133706 |
tctctggtagtaatgattattcgactccctgaaccaaaccatttactacttccacacaaagcattcatttgttccagagtatttacatcatcaa |
5133799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 375
Target Start/End: Original strand, 5159128 - 5159393
Alignment:
| Q |
110 |
gctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagct |
209 |
Q |
| |
|
||||| ||||| || |||||||||| || ||||||||| ||||||||| ||||||| | | |||| || |||||||||||||| ||||| ||||| |||| |
|
|
| T |
5159128 |
gctagtggcaaccccccagaatacttaactacatttctagaaatttcaacaaaatcgtttgtaggactcgcttgcttgaatgcgtgccaactaaatagct |
5159227 |
T |
|
| Q |
210 |
caattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatctctagtggtgatgactattctact |
309 |
Q |
| |
|
||||||||||||||||| ||| | ||||||| ||| || || ||| |||| || ||||| || | |||| || ||||| |||| ||||||||| |
|
|
| T |
5159228 |
caattgattcactttcatccatgtgtttcatttcaaatactttattaaccctattcccactaagtatatgtctatcccttgtggtaatgattattctact |
5159327 |
T |
|
| Q |
310 |
acccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatc |
375 |
Q |
| |
|
|| |||||||| |||| | ||| ||| ||||||||||| | ||| ||||||||||| || ||||| |
|
|
| T |
5159328 |
cccagaaccaaaccatttatgacttccgcacaaagcatttagttggtccaatgtattaacgtcatc |
5159393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 377
Target Start/End: Complemental strand, 5431808 - 5431515
Alignment:
| Q |
84 |
acaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttg |
183 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| | |||||| || ||||||| ||||||||| |||| || || | || || |||| |
|
|
| T |
5431808 |
acaaatatcgcccaagaacttctagagctagcggcaatcccgcggaatacataacggcatttctagaaatttcaacaaattctgctttgggactcacttg |
5431709 |
T |
|
| Q |
184 |
cttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcata |
283 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||| ||||| ||| ||| |||||||| |||||||||| ||||| || || | |||| |
|
|
| T |
5431708 |
cttgaatgcatgccatataaaaagctcaagtgattcactgtcatccatttttttatttgagtatatttcgtcaactctatcccctctgagtatatgcata |
5431609 |
T |
|
| Q |
284 |
tctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
| ||| || ||||| | ||||||||| || ||||||| || | ||||| |||||||||||||| ||| || ||||| ||||||||| |||| |
|
|
| T |
5431608 |
tttctggttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagcatccaactgttccaactcattcacatcgtcaa |
5431515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 377
Target Start/End: Original strand, 5104475 - 5104766
Alignment:
| Q |
86 |
aaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgct |
185 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||| || ||||||||||||| ||||||||| |||| |||| |||||| | | | || || |||||| |
|
|
| T |
5104475 |
aaatatgacccaaggacttccaatgctagtggcaaccccccagaatactcaactacatttctagaaaattcaataaaatcttttgtcggactcacttgct |
5104574 |
T |
|
| Q |
186 |
tgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatc |
285 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||| |||| || | | | |||| || | ||| || | | |||| |
|
|
| T |
5104575 |
tgaatgcatgccaactaaatagctcaattgattcactttcatccatgtgtttcatttcatatacatggttagccctatccccacaaagtatatgcctatc |
5104674 |
T |
|
| Q |
286 |
tctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|| || || |||| ||||||||| ||||||||||| |||| || || |||||||||||||| || ||| || | |||||| |||||||||| |
|
|
| T |
5104675 |
ccttgttgtaatgattattctactccccgaaccaaaccatttacaacttccacacaaagcatccagttggtcaagtgtattaacatcatcaa |
5104766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 5348834 - 5348706
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | ||||||||||| |||||||||| |||||||||| ||||| | |||||| ||||||||| |
|
|
| T |
5348834 |
ttaggaattcttttgagtttgtccaatacacttttccattctgttacccctc-tatcaaacaataatgacccaaggacttccaaagctagtggcaatcct |
5348736 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatt |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
5348735 |
ccagaatactcaactacatttctggaaatt |
5348706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 348
Target Start/End: Complemental strand, 5382054 - 5381786
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||| |||||||| ||||| || |||| || | | | |||||| | |||||| ||| |||| |||| |
|
|
| T |
5382054 |
tcaaacaaaaaagaaccaaggacttctagagctagaggcaatcccccagagtagtcaactatttctttacaaattttaaaaaaatcttctgtaggccttg |
5381955 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||||| |||||||||| || | ||||||| || |
|
|
| T |
5381954 |
gttgcttgaatgcatgccagctaaaaagctcaattgattcacaatcatccattgcttccaacatgtatacctgatcaactccatttgctctaagtatacg |
5381855 |
T |
|
| Q |
280 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcatt |
348 |
Q |
| |
|
||||||| || || |||| ||||||| | || |||||||| |||| ||||| |||||||| |||||| |
|
|
| T |
5381854 |
tttatctctggttgtcatgattattctagtccctgaaccaaaccatttacgacttccacacagagcatt |
5381786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 5445483 - 5445339
Alignment:
| Q |
82 |
aaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgct |
181 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |||| ||||||| |||||||| | ||||||| | | |||| | ||| |
|
|
| T |
5445483 |
aaacaaataagacccaaggacttcaagagctagcggcaatccctcagaatattcaactacatttttggaaattctaacaaaatcttttgtaggacacgct |
5445384 |
T |
|
| Q |
182 |
tgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
226 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||| ||||||||| |
|
|
| T |
5445383 |
cgcttgaatgcattccaactaaaaagctcgattgactcactttca |
5445339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 5285738 - 5285805
Alignment:
| Q |
78 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacattt |
145 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
5285738 |
tatcaaacaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacattt |
5285805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 377
Target Start/End: Complemental strand, 5348614 - 5348519
Alignment:
| Q |
282 |
tatctctagtggtgatgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
||||||| ||| |||||| |||||||| ||||||||||| |||| || || ||| ||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
5348614 |
tatctcttgtgttgatgataattctactccccgaaccaaaccatttacaacttccgcacaaagcatttaattggtccaatgtattaacatcatcaa |
5348519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 22585864 - 22586088
Alignment:
| Q |
25 |
ttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaacaaatatgacccaagcacttctagagctagcggcaatcct |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||| || |||||||||| |||||| ||||| |||||||||||||| ||| |
|
|
| T |
22585864 |
ttaggaattcttttgagtttctccaatacacattgccattctgttacccctc-tagcaaacaaataacgcccaaggacttccagagctagcggcaaccct |
22585962 |
T |
|
| Q |
125 |
ccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcacttt |
224 |
Q |
| |
|
|||||||| | || ||||| |||||||||||| |||||| || | || || |||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
22585963 |
ccagaataattaaccacattcatggaaatttcagaaaaatctactttgggtctcgcttgcttgaatgcattccaactaaaaagctcaattgactcacttt |
22586062 |
T |
|
| Q |
225 |
cacacatttctttcattgtgtatatt |
250 |
Q |
| |
|
|| |||| || ||||| |||||||| |
|
|
| T |
22586063 |
cattcattactgtcattatgtatatt |
22586088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 8876206 - 8876079
Alignment:
| Q |
80 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
179 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | |||||||| ||||||||||||| |||||||||||| ||| || |||||| |||||||| || | |
|
|
| T |
8876206 |
tcaaacaaatatgatccaagaacttctagagctggtggcaatcccccagaatactcaactacatttctggacattccaacaaaattttctctaggactcg |
8876107 |
T |
|
| Q |
180 |
cttgcttgaatgcatgccagctaaaaag |
207 |
Q |
| |
|
||||||||| |||||||| |||||||| |
|
|
| T |
8876106 |
gttgcttgaacgcatgccaactaaaaag |
8876079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 10345 - 10407
Alignment:
| Q |
160 |
aaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcact |
222 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10345 |
aaaatcatctctaggcctatcttgcttgaatgcatgccaactaaaaagctcaattgattcact |
10407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 10481 - 10562
Alignment:
| Q |
296 |
atgactattctactacccgaaccaaagcattgacgacgtccacacaaagcattcaattgatccaatgtattcacatcatcaa |
377 |
Q |
| |
|
|||| ||||||| | || |||||||| |||| ||||| ||||||||||||||| | ||| ||||| ||| ||||||||||| |
|
|
| T |
10481 |
atgattattctagtccctgaaccaaaccattcacgacttccacacaaagcatttagttggtccaaactatccacatcatcaa |
10562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 11572 - 11632
Alignment:
| Q |
176 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
236 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
11572 |
cttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
11632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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