View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_23 (Length: 403)

Name: NF18309_low_23
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_23
NF18309_low_23
[»] chr8 (7 HSPs)
chr8 (1-229)||(2791292-2791513)
chr8 (289-385)||(2791573-2791669)
chr8 (289-348)||(2781576-2781635)
chr8 (349-385)||(2781950-2781986)
chr8 (21-89)||(11404013-11404081)
chr8 (21-77)||(17095574-17095630)
chr8 (39-83)||(24475066-24475110)
[»] chr2 (3 HSPs)
chr2 (21-92)||(21637906-21637977)
chr2 (43-83)||(20961499-20961539)
chr2 (21-90)||(36380184-36380253)
[»] chr5 (1 HSPs)
chr5 (39-92)||(17064332-17064385)
[»] chr7 (2 HSPs)
chr7 (21-77)||(245316-245372)
chr7 (290-348)||(34782151-34782209)
[»] chr4 (3 HSPs)
chr4 (21-93)||(8740456-8740528)
chr4 (295-348)||(6061606-6061659)
chr4 (39-67)||(40012547-40012575)
[»] chr1 (2 HSPs)
chr1 (21-92)||(30054494-30054565)
chr1 (21-90)||(21090126-21090195)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2791292 - 2791513
Alignment:
Q  1 catacattatatgcagcaaaggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccgggaccaaagc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2791292 catacattatatgcagcaaaggctcaaagagtgtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccgggaccaaagc 2791391  T
Q  101 ctgtctttttgccactaaaccaaattcttggagttcaaatatgatcaataatggtttaatagtaacttgatacaaacgatttaatgataatccctatcta 200  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||          
T  2791392 ctgtctttttgccactaaaccaaattcttggagttaaaacatgatcaataatggtttaatagtaacttgatagaaaggatttaatgataatccc------ 2791485  T
Q  201 atatctatagagatacattcctaatcctt 229  Q
     ||||||||||||||||||||||||||||    
T  2791486 -tatctatagagatacattcctaatcctt 2791513  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 2791573 - 2791669
Alignment:
Q  289 tctaagagataatttaagatactctaggattaaaaaccgatcctaggagataaactaagagattctttggtatgaatgttgtatcttagatctctat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2791573 tctaagagataatttaagatactctaggattaaaaaccgatcctaggagataaactaagagattctttggtatgaatgttgtatcttagatctctat 2791669  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 2781576 - 2781635
Alignment:
Q  289 tctaagagataatttaagatactctaggattaaaaaccgatcctaggagataaactaaga 348  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2781576 tctaagagataatttatgatactctaggattaaaaaccgatcctaggagataaactaaga 2781635  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 2781950 - 2781986
Alignment:
Q  349 gattctttggtatgaatgttgtatcttagatctctat 385  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2781950 gattttttggtatgaatgttgtatcttagatctctat 2781986  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 11404081 - 11404013
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaaccc 89  Q
    |||||||||||   ||| ||||| |||||||||||||||||||||| |  |||||||| |||| |||||    
T  11404081 ggctcaaagagcacttacaaaggtatttacatttacctccctccaaagacactagcgaggctcgaaccc 11404013  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 17095630 - 17095574
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcg 77  Q
    |||||||||||  |||| ||||| | |||||||||||||||||||| || |||||||    
T  17095630 ggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcg 17095574  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 24475066 - 24475110
Alignment:
Q  39 aaagggatttacatttacctccctccaaggggactagcgaagctc 83  Q
    ||||| |||||||||||||||||||||| || ||||||| |||||    
T  24475066 aaaggtatttacatttacctccctccaaaggcactagcggagctc 24475110  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 21637977 - 21637906
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccggg 92  Q
    |||||||||||   ||| ||||| |||||||||||||||||||||| || |||||||  |||||||||||||    
T  21637977 ggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcaaacccggg 21637906  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 20961539 - 20961499
Alignment:
Q  43 ggatttacatttacctccctccaaggggactagcgaagctc 83  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  20961539 ggatttacatttacctccctccaagggcactagcggagctc 20961499  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 36380184 - 36380253
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccg 90  Q
    |||||||||||   ||| ||||||| |||||||||||||||||||| || |||||||  | |||||||||    
T  36380184 ggctcaaagagcacttacaaagggaattacatttacctccctccaaaggcactagcggggttcaaacccg 36380253  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 17064385 - 17064332
Alignment:
Q  39 aaagggatttacatttacctccctccaaggggactagcgaagctcaaacccggg 92  Q
    ||||| |||||||||||||||||||||| || |||||||| |||| ||||||||    
T  17064385 aaaggtatttacatttacctccctccaaaggcactagcgaggctcgaacccggg 17064332  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 245316 - 245372
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcg 77  Q
    ||||||||||| ||||| ||||  | ||||||||||||||||||||||| |||||||    
T  245316 ggctcaaagagcgtttacaaagataattacatttacctccctccaagggcactagcg 245372  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 34782151 - 34782209
Alignment:
Q  290 ctaagagataatttaagatactctaggattaaaaaccgatcctaggagataaactaaga 348  Q
    |||||||||||| ||||||| |||| |||||||||| |||| ||  |||||||||||||    
T  34782151 ctaagagataatctaagatattctaagattaaaaactgatcgtaatagataaactaaga 34782209  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 8740528 - 8740456
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccggga 93  Q
    |||||||||||   ||| ||||| |||||||||||||||||||||| || |||||||  |||| |||||||||    
T  8740528 ggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccggga 8740456  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 6061606 - 6061659
Alignment:
Q  295 agataatttaagatactctaggattaaaaaccgatcctaggagataaactaaga 348  Q
    ||||| |||||||||||||| ||||| |||||||||||| ||  ||||||||||    
T  6061606 agatagtttaagatactctaagattataaaccgatcctatgaagtaaactaaga 6061659  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 40012575 - 40012547
Alignment:
Q  39 aaagggatttacatttacctccctccaag 67  Q
    |||||||||||||||||||||||||||||    
T  40012575 aaagggatttacatttacctccctccaag 40012547  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 30054494 - 30054565
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccggg 92  Q
    |||||||||||  |||| ||||| | |||||||||||||||||||| || |||||||  |||| ||||||||    
T  30054494 ggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccggg 30054565  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 21090195 - 21090126
Alignment:
Q  21 ggctcaaagagggtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccg 90  Q
    |||||||||||  |||| ||| | |||||||||||||||||||||| || |||||||  |||| ||||||    
T  21090195 ggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggggctcgaacccg 21090126  T

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