View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_25 (Length: 388)
Name: NF18309_low_25
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 367
Target Start/End: Original strand, 4406375 - 4406739
Alignment:
| Q |
4 |
tcatacacgagtaaattagcatctatgttgtaatgaatcaattttattttatttttgaagaaattgtaatgaatcaaattatcgacgactaatttaaata |
103 |
Q |
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| T |
4406375 |
tcatacacgagtaaattagcatctatgttgtaatgaatcaattttattttatttttgaagaaattgtaatgaatcaaattatcaacgactaatttaaata |
4406474 |
T |
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| Q |
104 |
ttgtaagtgacaaatagtgtgtgtaaaattgatttttactagagggaaaaggtacaaatagtagttttgattccaaaatgaagcggatgaacataccaag |
203 |
Q |
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| T |
4406475 |
ttgtaagtgacaaatagagtgtgtaaaattgatttttactagagggaaaaggtacaaatagtagttttgattccaaaatgaagcggatgaacataccaag |
4406574 |
T |
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| Q |
204 |
attcaggggcgattgctttcttactaaaggggtagctatggctaacccaaagaagaagaa-aaaattattgaaagaataagtatgtttttatattaagct |
302 |
Q |
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| T |
4406575 |
attcaggggcgattgctttcttactaaaggggtagctatggctaacccaaagaagaagaagaaaattattgaaagaataagtatatttttatattaagct |
4406674 |
T |
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| Q |
303 |
aggaaccagaggatgaacacagaaaagttctacattctttgattgacaatgaaaatatgaccgca |
367 |
Q |
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| T |
4406675 |
aggaaccagaggatgaacacagaaaagttctacattctttgattgacaatgaaaatatgaccgca |
4406739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 39618588 - 39618492
Alignment:
| Q |
204 |
attcaggggcgattgctttcttactaaaggggtagctatggctaacccaaagaagaagaaaaaattattgaaagaataagtatgtttttatattaagcta |
303 |
Q |
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| T |
39618588 |
attcaggggcgattgctttcatgtgagaggggtagctatggctaccccaaag-aga--aaaaaattgttgaatgagttggtatatttttatattaagcta |
39618492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 20167462 - 20167534
Alignment:
| Q |
229 |
aaaggggtagctatggctaacccaaagaagaagaaaaaattattgaaagaataagtatgtttttatattaagcta |
303 |
Q |
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| T |
20167462 |
aaaggagtagctatggctacctcaaag--gaaaaaaatattattgaatgagtaagtatatttttatattaagcta |
20167534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 2410883 - 2410976
Alignment:
| Q |
207 |
caggggcgattgctttcttactaaaggggtagctatggctaacccaaagaagaagaaaaaattattgaaagaataagtatgtttttatattaagcta |
303 |
Q |
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| T |
2410883 |
caggggcgattgctttcatgtgagaggggtagctatggctaccccaaag-aga--aaaaaattgttgaatgagttggtatatttttatattaagcta |
2410976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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