View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_26 (Length: 379)

Name: NF18309_low_26
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_26
NF18309_low_26
[»] chr5 (3 HSPs)
chr5 (167-371)||(29046030-29046235)
chr5 (167-239)||(28705857-28705929)
chr5 (175-243)||(28705174-28705242)
[»] chr8 (4 HSPs)
chr8 (186-371)||(37733445-37733631)
chr8 (167-325)||(41974642-41974800)
chr8 (167-252)||(8996939-8997024)
chr8 (168-239)||(38576280-38576351)
[»] chr7 (12 HSPs)
chr7 (225-306)||(21870742-21870823)
chr7 (225-289)||(21869984-21870048)
chr7 (167-243)||(26636104-26636180)
chr7 (167-252)||(19067638-19067723)
chr7 (168-216)||(14686133-14686181)
chr7 (167-243)||(30661430-30661506)
chr7 (167-243)||(37949606-37949682)
chr7 (168-239)||(25342499-25342570)
chr7 (168-239)||(25343305-25343376)
chr7 (168-246)||(24389588-24389666)
chr7 (167-247)||(3903310-3903390)
chr7 (168-252)||(42421016-42421100)
[»] chr4 (6 HSPs)
chr4 (168-243)||(26159596-26159671)
chr4 (167-218)||(1867790-1867841)
chr4 (167-218)||(47785799-47785850)
chr4 (186-246)||(5046005-5046065)
chr4 (167-243)||(8247698-8247774)
chr4 (167-243)||(53732437-53732513)
[»] chr3 (4 HSPs)
chr3 (186-243)||(41474671-41474728)
chr3 (167-245)||(45081376-45081454)
chr3 (168-218)||(31974654-31974704)
chr3 (167-245)||(46150702-46150780)
[»] chr2 (6 HSPs)
chr2 (167-239)||(22560546-22560618)
chr2 (186-243)||(22559879-22559936)
chr2 (168-239)||(1297101-1297172)
chr2 (168-239)||(9275589-9275660)
chr2 (175-249)||(42182583-42182657)
chr2 (168-241)||(29559396-29559469)
[»] chr1 (5 HSPs)
chr1 (167-305)||(8987791-8987930)
chr1 (167-252)||(34309196-34309281)
chr1 (168-216)||(7558451-7558499)
chr1 (180-289)||(8988477-8988586)
chr1 (167-247)||(25469057-25469137)
[»] chr6 (1 HSPs)
chr6 (167-247)||(19311002-19311082)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 167 - 371
Target Start/End: Original strand, 29046030 - 29046235
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaattttaatgtttctat 266  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  29046030 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacggtacattatatttaatcaaaggctaatattaattttaatgtttatat 29046129  T
Q  267 ttcctgtatatccttactctcaaccgcacactgtttttgc-ctatatgagatttgaaacctgtacattattattcctattaatgtccgcatcttttcctt 365  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  29046130 ttcctgtatatccttactctcaaccgcacactgtttttgctctatatgagatttgaaacctgtacgttattattcctattaatgtctgcatcttttcctt 29046229  T
Q  366 catctc 371  Q
    ||||||    
T  29046230 catctc 29046235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 28705929 - 28705857
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |||||||||||||||||||    
T  28705929 caggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccgtacattatatttaatcaaa 28705857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 28705174 - 28705242
Alignment:
Q  175 gttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    |||| ||||| ||||||||||||| ||| | || |||||||||| | ||||||||||||||||||||||    
T  28705174 gttgacaccaggtgtcaacggattcgtttacaccaaatctcaaccagacattatatttaatcaaaggct 28705242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 186 - 371
Target Start/End: Complemental strand, 37733631 - 37733445
Alignment:
Q  186 gtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaattttaatgtttctatttcctgtatatccttactc 285  Q
    |||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37733631 gtgtcaacgggttcgttgacaccaaatctcaacggtacattatatttaatcaaaggctgatattaattttaatgtttctatttcctgtatatccttactc 37733532  T
Q  286 tcaaccgcacactgtttttgc-ctatatgagatttgaaacctgtacattattattcctattaatgtccgcatcttttccttcatctc 371  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37733531 tcaacagcacactgtttttgctctatatgagatttgaaacctgtacattattattcctattaatgtctgcatcttttccttcatctc 37733445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 41974642 - 41974800
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaattttaatgtttctat 266  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || |||||||| | || ||||||||||||||||| |||  ||||  | | |||||||||||    
T  41974642 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcattatatttaatcaaacgctcctatttgtgtcaatgtttctat 41974741  T
Q  267 ttcctgtatatccttactctcaaccgcacactgtttttg-cctatatgagatttgaaacc 325  Q
    |||| ||||  |||| || |||||| |||||| || |||  |||||||||| ||||||||    
T  41974742 ttccagtatcccctttctttcaacc-cacactattattgttctatatgagagttgaaacc 41974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 8997024 - 8996939
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaat 252  Q
    ||||||| ||||  |||| |||||||| |||||||||| || |||||||||| ||  || || | |||||||||||||||||||||    
T  8997024 caggatccgttgataccaggtgtcaactgatttgttgacaccaaatctcaaccatcaataatctataatcaaaggctaatattaat 8996939  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 38576351 - 38576280
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    |||||| |||| ||||| ||||||||||||| ||||| || |||||||||| ||  ||| ||||||||||||    
T  38576351 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaa 38576280  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 21870742 - 21870823
Alignment:
Q  225 ttatatttaatcaaaggctaatattaattttaatgtttctatttcctgtatatccttactctcaaccgcacactgtttttgc 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21870742 ttatatttaatcaaaggttaatattaattttaatgtttctatttcctgtatatccttactctcaactgcacactgtttttgc 21870823  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 21869984 - 21870048
Alignment:
Q  225 ttatatttaatcaaaggctaatattaattttaatgtttctatttcctgtatatccttactctcaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21869984 ttatatttaatcaaaggctaatattaattttaatgtttctatttcctgtatatccttactctcaa 21870048  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 26636104 - 26636180
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |||||||||||||||||||||||    
T  26636104 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaaggct 26636180  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 19067638 - 19067723
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaat 252  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |  ||| ||||||||||||||| |||| ||||    
T  19067638 caggatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataat 19067723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 14686133 - 14686181
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctca 216  Q
    |||||| |||| ||||||||||||||||||||||||| || ||||||||    
T  14686133 aggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 14686181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 30661506 - 30661430
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |  ||| ||||||||||||||||    
T  30661506 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggct 30661430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 37949606 - 37949682
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |  ||| ||||||||||||||||    
T  37949606 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggct 37949682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 25342499 - 25342570
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    |||||| |||| ||||| ||||||||||||| ||||| || |||||||||| ||  ||| ||||||||||||    
T  25342499 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaa 25342570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 25343305 - 25343376
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    |||||| |||| ||||| ||||||||||||| ||||| || |||||||||| ||  ||| ||||||||||||    
T  25343305 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaa 25343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 24389666 - 24389588
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaat 246  Q
    |||||| |||| ||||| |||||||||||||  |||| || |||||||||| ||  ||| ||||||||||||| |||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaaccatttattttatttaatcaaagactaat 24389588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 3903390 - 3903310
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaata 247  Q
    ||||||| |||| ||||| ||||||||||||  ||||| || |||| ||||  || |||| |||||||||||||| |||||    
T  3903390 caggatccgttgacaccaggtgtcaacggatccgttgacaccaaatatcaatcattcattttatttaatcaaaggataata 3903310  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 42421100 - 42421016
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaat 252  Q
    ||||||||||| |||||  ||||||| |||||||||| || ||||||||||  |  || || | |||||||| ||||||||||||    
T  42421100 aggatctgttgacaccagatgtcaaccgatttgttgacaccaaatctcaaccgtcaataatctataatcaaaagctaatattaat 42421016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 26159671 - 26159596
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    |||||| |||| || |||||||||||||||| ||||| || ||||| ||||  |||||||||||||||||||||||    
T  26159671 aggatccgttgacatcaagtgtcaacggattcgttgacaccaaatcgcaaccgtacattatatttaatcaaaggct 26159596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 1867841 - 1867790
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaac 218  Q
    |||||| ||||  ||||||||||||||| |||||||||||| ||||||||||    
T  1867841 caggatttgttcacaccaagtgtcaacgaatttgttgatactaaatctcaac 1867790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 47785850 - 47785799
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaac 218  Q
    |||||||||||| ||||| ||||||||||||| ||||| || ||||||||||    
T  47785850 caggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaac 47785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 5046005 - 5046065
Alignment:
Q  186 gtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaat 246  Q
    ||||||||||||| ||||| || ||||||||||  |  ||| |||||||||||||||||||    
T  5046005 gtgtcaacggattcgttgacaccaaatctcaaccgtttattttatttaatcaaaggctaat 5046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 8247698 - 8247774
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||| |||| ||||  ||||||||||||| ||||| ||||||||| |||  |  ||| ||||||||||||||||    
T  8247698 caggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctattttatttaatcaaaggct 8247774  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 53732437 - 53732513
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |  ||| ||||| ||||||||||    
T  53732437 caggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccgtctattttattttatcaaaggct 53732513  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 41474671 - 41474728
Alignment:
Q  186 gtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    ||||||||||||| ||| | |||||||||||||  |||||||||||||||||||||||    
T  41474671 gtgtcaacggattcgtttacacaaaatctcaaccgtacattatatttaatcaaaggct 41474728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 45081454 - 45081376
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaa 245  Q
    ||||||| |||| |||| |||||||||||||| ||||| || |||||||||| ||  ||| ||||| ||||||||||||    
T  45081454 caggatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaaccatttattttatttgatcaaaggctaa 45081376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 31974654 - 31974704
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaac 218  Q
    |||||| |||| ||||||||||||||||||| ||||| || ||||||||||    
T  31974654 aggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaac 31974704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 46150780 - 46150702
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaa 245  Q
    ||||||| |||| ||| | ||||||||||||| ||||| || |||||||||| ||  ||| ||||| ||||||||||||    
T  46150780 caggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatttattttatttgatcaaaggctaa 46150702  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 22560618 - 22560546
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    ||||||| |||| || || ||||||||||||| ||||| || ||||||||||  |||||||||||||||||||    
T  22560618 caggatccgttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaa 22560546  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 22559879 - 22559936
Alignment:
Q  186 gtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggct 243  Q
    |||||||| |||| ||||| || ||||||||||  |||||||||||||||||||||||    
T  22559879 gtgtcaacagattcgttgacaccaaatctcaaccgtacattatatttaatcaaaggct 22559936  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 1297172 - 1297101
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    |||||| |||| ||||| ||||||||||||| ||||| || |||||||||| ||  ||| ||||||||||||    
T  1297172 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaa 1297101  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 9275589 - 9275660
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaa 239  Q
    |||||| |||| ||||| ||||||||||||| ||||| || |||||||||| ||  ||| ||||||||||||    
T  9275589 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaa 9275660  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 42182657 - 42182583
Alignment:
Q  175 gttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatatt 249  Q
    |||| ||||| ||||||| ||||| ||||| || ||||||||||  || ||||||||| ||||||||||| ||||    
T  42182657 gttgacaccaggtgtcaagggattcgttgacaccaaatctcaaccgtagattatatttgatcaaaggctactatt 42182583  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 29559469 - 29559396
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaagg 241  Q
    ||||||||||| ||||| ||||||||| ||| ||||| || |||||||||  || |||| |||| |||||||||    
T  29559469 aggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaatcatccattttattcaatcaaagg 29559396  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 8987791 - 8987930
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgataca-ttatatttaatcaaaggctaatattaattttaatgtttcta 265  Q
    ||||||| |||| || || ||||||||||||| ||||| || |||||||||| ||||| |||||||| ||||||||||  ||||| | |  |   |||||    
T  8987791 caggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccatacagttatatttgatcaaaggctcctattagtgtctactcttcta 8987890  T
Q  266 tttcctgtatatccttactctcaaccgcacactgtttttg 305  Q
    |||| ||||| || || |||||||||| ||||| ||||||    
T  8987891 tttcatgtatctctttcctctcaaccgtacactatttttg 8987930  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 34309281 - 34309196
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaat 252  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || ||||||||||  |  ||| ||||||||||||||| |||| ||||    
T  34309281 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataat 34309196  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 7558451 - 7558499
Alignment:
Q  168 aggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctca 216  Q
    |||||| |||| ||||||||||||||||||||||||| || ||||||||    
T  7558451 aggatccgttgacaccaagtgtcaacggatttgttgacaccaaatctca 7558499  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 8988586 - 8988477
Alignment:
Q  180 caccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaatattaattttaatgtttctatttcctgtatatcc 279  Q
    ||||| |||||||||||||  |||| || ||||||||||  ||||||||||||||| ||| |||  ||||| | |  | ||||||||||| ||||| ||     
T  8988586 caccaggtgtcaacggattccttgacaccaaatctcaaccgtacattatatttaattaaaagctcttattagtgtctacgtttctatttcttgtatctct 8988487  T
Q  280 ttactctcaa 289  Q
    || |||||||    
T  8988486 ttcctctcaa 8988477  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 25469137 - 25469057
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaata 247  Q
    ||||||| |||| ||||| ||||||||||||| ||||| || |||||| |||  |  ||| | ||||||||||||||||||    
T  25469137 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgttgattgtttttaatcaaaggctaata 25469057  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 19311002 - 19311082
Alignment:
Q  167 caggatctgttggcaccaagtgtcaacggatttgttgatacaaaatctcaacgatacattatatttaatcaaaggctaata 247  Q
    ||||||| |||| ||||| |||| |||||||||||||| || ||||||||||  |  ||  |||||||||||||| |||||    
T  19311002 caggatccgttgacaccaggtgttaacggatttgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaata 19311082  T

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