View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_28 (Length: 368)

Name: NF18309_low_28
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_28
NF18309_low_28
[»] chr3 (1 HSPs)
chr3 (9-364)||(28424658-28425017)
[»] chr8 (3 HSPs)
chr8 (11-364)||(23388578-23388929)
chr8 (178-298)||(29184726-29184844)
chr8 (178-298)||(35238501-35238619)
[»] chr7 (4 HSPs)
chr7 (11-341)||(42841050-42841379)
chr7 (178-298)||(19431626-19431744)
chr7 (178-298)||(34827170-34827288)
chr7 (178-298)||(43551683-43551801)
[»] chr5 (1 HSPs)
chr5 (80-306)||(10021606-10021826)
[»] scaffold0003 (2 HSPs)
scaffold0003 (200-298)||(106699-106797)
scaffold0003 (75-159)||(106920-107004)
[»] chr2 (2 HSPs)
chr2 (199-298)||(38066077-38066173)
chr2 (178-298)||(1442888-1443006)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 28425017 - 28424658
Alignment:
Q  9 agcaaaggttaatgcattattgttatcatcaccctgttatct----gaataatttttgtaaagaagctacctttatcaattgaatctcattcatttaaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28425017 agcaaaggttaatgcattattgttatcatcaccctgttatctatctgaataatttttgtaaagaagctacctttatcaattgaatctcattcatttaaac 28424918  T
Q  105 ccagattaagatttgtcccaagaaaaatcaagattattgagatattaaattgacagtttaatattacatgttttcttcatctcttcttcaatggatcttc 204  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424917 ccatattaagatttgtcccaagaaaaaccaagattattgagatattaaattgacagtttaatattacatgttttcttcatctcttcttcaatggatcttc 28424818  T
Q  205 atcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaataggatcac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424817 atcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaataggatcac 28424718  T
Q  305 aatatttgcgattggattcacagtgacggataaacaacacggagcatgacaaagattaca 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28424717 aatatttgcgattggattcacagtgacggataaacaacacggagcaggacaaagattaca 28424658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 23388929 - 23388578
Alignment:
Q  11 caaaggttaatgcattattgttatcatcaccctgttatctgaataatttttgtaaagaagctacctttatcaattgaatctcattcatttaaacccagat 110  Q
    ||||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  23388929 caaaggttaatgcattattgttatcatcggcctgctatctaaataatttttgtaaagaagctgcctttttcaattgaatctcattcatttaaacctagat 23388830  T
Q  111 taagatttgtcccaagaaaaatcaagattattgagatattaaattgacagtttaatattacatgttttcttcatctcttcttcaatggatcttcatcatc 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  23388829 taagatttgtcccaagaaaaaccaagattattgagatattaaattgacaatttaatattacatgttttcttcatct---cttcaaaggatcttcatcatc 23388733  T
Q  211 ttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaataggatcacaatatt 310  Q
    |||  ||||||||||| || |||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  23388732 ttcaccaatttttcttgctcaaagttcaaatctaaaaaatcacagcaacaagaaaatgtacagatctgaaaaatcaccacaaaaataggaccacaatatt 23388633  T
Q  311 tgcgattggattcacagtgacggataaac-aacacggagcatgacaaagattaca 364  Q
    ||||||||||||||| ||||||||||||| ||| ||||||| |||| ||||||||    
T  23388632 tgcgattggattcacggtgacggataaacaaactcggagcaagacagagattaca 23388578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 29184844 - 29184726
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  29184844 tcttcatgtgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 29184748  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  29184747 tagaaaatcaccacatcaatag 29184726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 35238619 - 35238501
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  35238619 tcttcatgtgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 35238523  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  35238522 tagaaaatcaccacatcaatag 35238501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 42841379 - 42841050
Alignment:
Q  11 caaaggttaatgcattattgttatcatcaccctgttatctgaataatttttgtaaagaagctacctttatcaattgaatctcattcatttaaacccagat 110  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||    
T  42841379 caaaggttaatgcattattgttatcatcgccctgctatctgaataatttttgtaaagaagctgccattttcaattgaatctcattcatttaaaccc-gat 42841281  T
Q  111 taagatttgtcccaagaaaaatcaagattattgagatattaaattgacagtttaatattacatgttttcttcatctcttcttcaatggatcttcatcatc 210  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42841280 taagatttgtcccaagaaaaaccaatattattgagatattaaattgacaatttaatattacatgttttcttcatctcttcttcaaaggatcttcatcatc 42841181  T
Q  211 ttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaataggatcacaatatt 310  Q
    |||  ||||||||||| || |||||| | ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  42841180 ttcaccaatttttcttgctcaaagttgaaatctaaaaaatcacagcaacaagaaaatgtacagatctgaaaaatcaccacaaaaataggaccataatatt 42841081  T
Q  311 tgcgattggattcacagtgacggataaacaa 341  Q
    ||||||||||||||| ||||| |||||||||    
T  42841080 tgcgattggattcacggtgacagataaacaa 42841050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 19431744 - 19431626
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  19431744 tcttcatttgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 19431648  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  19431647 tagaaaatcaccacatcaatag 19431626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 34827170 - 34827288
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  34827170 tcttcatgtgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 34827266  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  34827267 tagaaaatcaccacatcaatag 34827288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 43551801 - 43551683
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  43551801 tcttcatgtgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 43551705  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  43551704 tagaaaatcaccacatcaatag 43551683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 80 - 306
Target Start/End: Complemental strand, 10021826 - 10021606
Alignment:
Q  80 tcaattgaatctcattcatttaaacccagattaagatttgtcccaagaaaaatcaagattattgagatattaaattgacagtttaatattacatgttttc 179  Q
    |||||||||||||||||||| ||| | ||||||| ||||||||||||||||| | ||||||| |||||||||||||||||  || |||||| ||||||||    
T  10021826 tcaattgaatctcattcattaaaatctagattaatatttgtcccaagaaaaacccagattatggagatattaaattgacaactttatatta-atgttttc 10021728  T
Q  180 ttcatctcttcttcaatggatcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctga 279  Q
    |||||  ||||||||| | |||||||||||||||  |||||||||||| | ||||| |||||||||| ||| |  | |     |||||||| ||||||||    
T  10021727 ttcattccttcttcaaagaatcttcatcatcttcaccaatttttcttattcaaagtccagatctaaacaataatcata-----aaaatgtacagatctga 10021633  T
Q  280 aaaatcaccacaacaataggatcacaa 306  Q
    | ||||||||||||||||||| |||||    
T  10021632 acaatcaccacaacaataggaccacaa 10021606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 106797 - 106699
Alignment:
Q  200 tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaatag 298  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||  ||||||| |||||  |||| ||||||  |||||||| ||||||||||    
T  106797 tcttcatcatcttcaccaatttttcttactaaaagttcagatctaaaaaactacaacaacaagaagctgtacagatctagaaaatcactacaacaatag 106699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 107004 - 106920
Alignment:
Q  75 ctttatcaattgaatctcattcatttaaacccagattaagatttgtcccaagaaaaatcaagattattgagatattaaattgaca 159  Q
    |||| ||||||||| |||||||||| ||||||| || | ||||||||| || ||||||| || ||||| ||||||||||||||||    
T  107004 ctttttcaattgaaactcattcattgaaacccatatcatgatttgtcctaaaaaaaatctaggttattaagatattaaattgaca 106920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 38066173 - 38066077
Alignment:
Q  199 atcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatctgaaaaatcaccacaacaatag 298  Q
    ||||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||| | ||||||||||||| ||||||    
T  38066173 atcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatgtaaaaaatcaccacatcaatag 38066077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 1443006 - 1442888
Alignment:
Q  178 tcttcatctcttcttcaatgga-tcttcatcatcttcgtcaatttttcttacttaaagttcagatctaaaaaatcacaacaaaaagaaaatgtatagatc 276  Q
    ||||||| | |||| ||||||| |||||||||||| |  |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||     
T  1443006 tcttcatgtgttctacaatggaatcttcatcatctccaccaatttttcttactaaaagttcagatctaaaaa---acaacaacaagaaaatgtacagatg 1442910  T
Q  277 tgaaaaatcaccacaacaatag 298  Q
    |  |||||||||||| ||||||    
T  1442909 tagaaaatcaccacatcaatag 1442888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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