View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_29 (Length: 357)
Name: NF18309_low_29
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_29 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 13715596 - 13715934
Alignment:
| Q |
1 |
acaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnnnnnatgtgggggg |
100 |
Q |
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| T |
13715596 |
acaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccgagtgtgtgtgtgtgt--atgtgggggg |
13715693 |
T |
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| Q |
101 |
tggggacaaaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatccccatccatagagt |
200 |
Q |
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| T |
13715694 |
tggggacaaaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatccccatccatagagt |
13715793 |
T |
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| Q |
201 |
gaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaat |
300 |
Q |
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| T |
13715794 |
gaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaatgtatgagggaat |
13715893 |
T |
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| Q |
301 |
ctgccattgttggtgcacaatgtaatatgacaccttcatgt |
341 |
Q |
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| T |
13715894 |
ctgccattgttggtgcacgatgtaatatgacaccttcatgt |
13715934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 36099 - 36202
Alignment:
| Q |
238 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
337 |
Q |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
338 |
atgt |
341 |
Q |
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|||| |
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| T |
36199 |
atgt |
36202 |
T |
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