View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_3 (Length: 964)
Name: NF18309_low_3
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 265 - 950
Target Start/End: Original strand, 14176345 - 14177031
Alignment:
| Q |
265 |
cttgttgattcacaattttaatcttctcgttctaaaatctaaaaatataacttcacaatagaaatttgagaattttgtttccaaacctccgatattctcg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176345 |
cttgttgattcacaattttaatcttctcgttctaaaatctaaaaatataatttcacaatagaaatttgagaattttgtttccaaacctccgatattctcg |
14176444 |
T |
|
| Q |
365 |
caagccttctgaaattctcatttttgctgaattttggattatataatttgaataccctagagtccaacaaaccacataaaatgcttttgtacatttgcat |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14176445 |
caagccttctgaaattctcatttttgctgaattttggattatataatttgaataccctagagtccaacaaaccacagaaaatgcttttgtacatttgcat |
14176544 |
T |
|
| Q |
465 |
atttaaaaaatttcataaacta-aaggtttgacgaacataaacatatataattatatcaagaatatcatattaaatagaatatgtgtttacttctctaat |
563 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176545 |
atttaaaaaatttcataaaccagaaggtttgacgaacataaacatatataattatatcaagaatatcatattaaatagaatatgtgtttacttctctaat |
14176644 |
T |
|
| Q |
564 |
gatattcatttaatttaattcgtcacgtggtctatgcaacaattatcaatttcaagactatcaatttcatcctttactccgtggtcaactttcttatcat |
663 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
14176645 |
gatattcatttaatttaatttgtcacgtggtctatgcaacaattatcaatttcaagactatcaacttcatcctttactccgtcgtcaactttcttatcat |
14176744 |
T |
|
| Q |
664 |
caacaactttctattccttctcaaagttttcaacaatcaccacatcatcatctcaattatctcatgacctgccgcacgacttagttcattacaactagcc |
763 |
Q |
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| T |
14176745 |
caacagctttctattccttctcaaagttttcaacaatcaccacatcatcatctcaattatctcatgacctgccacacgacttagttcattacaactagcc |
14176844 |
T |
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| Q |
764 |
atcctacaaatatacccaagctcccaaggctctgcaccatctcaatgatgttgtgcatatagttaaaatgtgagaggattggacacccgtccttcagata |
863 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14176845 |
atcctacgaatatacccaagctcccaaggctctgcaccatctcaatgatgttgtgcatatagttaaaatgtgagaggattagacacccgtccttcagata |
14176944 |
T |
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| Q |
864 |
tacatgtaatataatgacattaaacatgaactaaattcagagagaaaagtttaccataaaaaatgactgccattcgatctatctgtg |
950 |
Q |
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| T |
14176945 |
tacatgtaatataatgacattaaacatgaactaaattcagagagaaaagtttaccataaaaaatgactgccattcgatctatctgtg |
14177031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 14176093 - 14176254
Alignment:
| Q |
23 |
atgatctgggattcttttcttatacgttgctttgcatttgcttctattatattgt----------tttgtttttaagagtctagcagtgaaactcgcata |
112 |
Q |
| |
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| T |
14176093 |
atgatctgggattcttttcttatacgttgctttgcatttgcttctattatattgttttgttttgttttgtttttaagagtctagcggtgaaactcgcata |
14176192 |
T |
|
| Q |
113 |
gacttacggcctagccgtaggaaattgtatatttgaactcataccacaacatatcaaatgtc |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14176193 |
gacttacggcctagccgtaggaaattgtatatttgaactcataccacaacatatcgaatgtc |
14176254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 593 - 717
Target Start/End: Original strand, 6811501 - 6811625
Alignment:
| Q |
593 |
gtctatgcaacaattatcaatttcaagactatcaatttcatcctttactccgtggtcaactttcttatcatcaacaactttctattccttctcaaagttt |
692 |
Q |
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|||||| | ||||| || ||||||||||||||||| |||| | |||||||| | | ||| ||||||||||||| ||| ||| |||||||| || |||| |
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| T |
6811501 |
gtctatactacaatcattaatttcaagactatcaacttcaacttttactccatcttgaacattcttatcatcaataaccctctcttccttctaaaggttt |
6811600 |
T |
|
| Q |
693 |
tcaacaatcaccacatcatcatctc |
717 |
Q |
| |
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|
| T |
6811601 |
tcaacaatcaacatatcatcatctc |
6811625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 602 - 744
Target Start/End: Complemental strand, 12124155 - 12124013
Alignment:
| Q |
602 |
acaattatcaatttcaagactatcaatttcatcctttactccgtggtcaactttcttatcatcaacaactttctattccttctcaaagttttcaacaatc |
701 |
Q |
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||||| ||||||| |||||||||||| || | |||||||||| | ||||| ||||||||| || ||||||||| ||||||||| | || ||||||||| |
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| T |
12124155 |
acaataatcaattccaagactatcaacttaaacctttactccatcttcaacattcttatcaacatcaactttctcttccttctcgagattgtcaacaatc |
12124056 |
T |
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| Q |
702 |
accacatcatcatctcaattatctcatgacctgccgcacgact |
744 |
Q |
| |
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|| || |||||||| || |||||| |||||| |||||||| |
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| T |
12124055 |
actacgtcatcatccatgttgtctcataacctgctgcacgact |
12124013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 648 - 717
Target Start/End: Complemental strand, 13750728 - 13750659
Alignment:
| Q |
648 |
tcaactttcttatcatcaacaactttctattccttctcaaagttttcaacaatcaccacatcatcatctc |
717 |
Q |
| |
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||||| ||||||||| ||||||| |||| ||||||||||| ||||||||||||||| |||| ||| |||| |
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| T |
13750728 |
tcaaccttcttatcaacaacaacattctcttccttctcaaggttttcaacaatcacaacatgatcgtctc |
13750659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 486 - 571
Target Start/End: Complemental strand, 5505861 - 5505780
Alignment:
| Q |
486 |
aaaggtttgacgaacataaacatatataattatatcaagaatatcatattaaatagaatatgtgtttacttctctaatgatattca |
571 |
Q |
| |
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| T |
5505861 |
aaagatttgaccaaaataaacatatataattatatgaaaaat----tattatatataatatgtgtttagttccctaatgatattca |
5505780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 708
Target Start/End: Original strand, 41060967 - 41061027
Alignment:
| Q |
648 |
tcaactttcttatcatcaacaactttctattccttctcaaagttttcaacaatcaccacat |
708 |
Q |
| |
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||||||||||||| ||||||||||| || ||||||||| | |||||||| |||||| |||| |
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|
| T |
41060967 |
tcaactttcttatgatcaacaacttcctcttccttctcgaggttttcaataatcactacat |
41061027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 728
Target Start/End: Complemental strand, 6023671 - 6023620
Alignment:
| Q |
678 |
tccttctcaaagttttcaacaatcaccacatcatcatct-caattatctcat |
728 |
Q |
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||||||| || ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
6023671 |
tccttctaaaggttttcaactatcaccacatcatcatctccaattatctcat |
6023620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 48785297 - 48785264
Alignment:
| Q |
382 |
tcatttttgctgaattttggattatataatttga |
415 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
48785297 |
tcatttttgcagaattttggattatataatttga |
48785264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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