View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_31 (Length: 351)

Name: NF18309_low_31
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_31
NF18309_low_31
[»] chr4 (8 HSPs)
chr4 (1-344)||(25568567-25568917)
chr4 (7-114)||(4135099-4135205)
chr4 (6-122)||(4322411-4322526)
chr4 (9-73)||(4334133-4334197)
chr4 (15-122)||(4125749-4125855)
chr4 (254-324)||(4319534-4319604)
chr4 (1-122)||(6499643-6499763)
chr4 (2-122)||(6547199-6547318)
[»] chr6 (26 HSPs)
chr6 (4-122)||(5691420-5691537)
chr6 (3-122)||(5148268-5148386)
chr6 (3-114)||(5395618-5395728)
chr6 (8-122)||(5094621-5094734)
chr6 (16-122)||(5104181-5104286)
chr6 (16-122)||(5369048-5369153)
chr6 (8-119)||(5075043-5075153)
chr6 (8-122)||(5424333-5424446)
chr6 (21-122)||(5261455-5261555)
chr6 (21-122)||(5285454-5285554)
chr6 (3-114)||(5183269-5183379)
chr6 (8-122)||(5158810-5158923)
chr6 (3-73)||(5342269-5342339)
chr6 (220-322)||(5353097-5353199)
chr6 (5-122)||(5133214-5133330)
chr6 (8-122)||(5348955-5349070)
chr6 (9-114)||(5355933-5356037)
chr6 (3-119)||(5277268-5277383)
chr6 (26-85)||(5445675-5445734)
chr6 (8-122)||(5068383-5068496)
chr6 (3-119)||(5175441-5175556)
chr6 (254-324)||(5101050-5101120)
chr6 (254-324)||(5136151-5136221)
chr6 (272-321)||(5351411-5351460)
chr6 (272-324)||(2938920-2938972)
chr6 (272-324)||(5156245-5156297)
[»] chr7 (1 HSPs)
chr7 (3-122)||(36215201-36215319)
[»] chr2 (1 HSPs)
chr2 (21-122)||(22585630-22585730)
[»] chr5 (1 HSPs)
chr5 (15-117)||(8876390-8876491)
[»] chr3 (4 HSPs)
chr3 (220-324)||(47985625-47985729)
chr3 (220-324)||(47994912-47995016)
chr3 (220-324)||(48004199-48004303)
chr3 (220-324)||(48013484-48013588)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 25568567 - 25568917
Alignment:
Q  1 taatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25568567 taatacatatattgaatggttgtgaactttatgcagaaattggaataaacgtccttgttgagcgaagccttgtgactattgatgaattggaacagacttg 25568666  T
Q  101 gaatgcatgatttgttgcgagaatgattat-------tattattataatgttaaataaaaattgagcctgttttcacaattacagattatgaataacgat 193  Q
    ||||||||||||||||||||||||||| |        |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25568667 gaatgcatgatttgttgcgagaatgatgaaaaaattatattattatattgttaaataaaaattgagtctgttttcacaattacagattatgaataacgat 25568766  T
Q  194 ggccattatggtgctttcctacgccatgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaag 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  25568767 ggccattatggtgctttcctacgccatgataattatccaaattggttgaccttgtacagtgaaggttcttcagtaatttttgaagtacctcgagtggaag 25568866  T
Q  294 ggcgtgtcttgaaaacaatgatttgcattgttgattcttggacctatgcta 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25568867 ggcgtgtcttgaaaacaatgatttgcattgttgattcttggacctatgcta 25568917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 4135205 - 4135099
Alignment:
Q  7 atatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgc 106  Q
    ||||||| ||||||||||  |||| ||| ||||| ||||||| ||||||||||||||||||| |||| |||||||||| ||   ||||  ||||||||||    
T  4135205 atatattaaatggttgtggtctttttgctgaaatcggaataagtgtccttgttgagcgaagccttgtaactattgatg-ataaaaacaagcttggaatgc 4135107  T
Q  107 atgatttg 114  Q
    ||||||||    
T  4135106 atgatttg 4135099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 4322526 - 4322411
Alignment:
Q  6 catatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatg 105  Q
    |||||||| ||||||| || | |||  |||||||||||||||| ||||||||||||| ||||| |||| ||  |||||| ||  |||||  ||||| |||    
T  4322526 catatattaaatggttctggatttttcgcagaaattggaataagtgtccttgttgagagaagccttgtaacggttgatg-ataagaacaagcttggcatg 4322428  T
Q  106 catgatttgttgcgaga 122  Q
    ||||||||| |||||||    
T  4322427 catgatttgctgcgaga 4322411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 4334133 - 4334197
Alignment:
Q  9 atattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgt 73  Q
    ||||| ||||| |||| |||||  || ||||||||||||| ||||||||||||||||||| ||||    
T  4334133 atattaaatggctgtggacttttcgctgaaattggaataagtgtccttgttgagcgaagccttgt 4334197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 4125855 - 4125749
Alignment:
Q  15 aatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttg 114  Q
    ||||| |||| |||||  || ||||||||||||| |||||||||||| |||||| |||| ||  |||||| ||  |||||  ||||| ||||||||||||    
T  4125855 aatggctgtggacttttcgctgaaattggaataagtgtccttgttgaacgaagccttgtaacagttgatg-ataagaacaagcttggcatgcatgatttg 4125757  T
Q  115 ttgcgaga 122  Q
     |||||||    
T  4125756 ctgcgaga 4125749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 4319604 - 4319534
Alignment:
Q  254 gaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgt 324  Q
    |||||||||||  ||||||||||||| |||| ||||||||| |||  |||||| ||||| || ||||||||    
T  4319604 gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgt 4319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 6499763 - 6499643
Alignment:
Q  1 taatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttg 100  Q
    ||||||| ||||| ||||| |||| | ||| ||| || |||||||| || |||||||| ||||||||| || | | ||||||  ||| ||||||  |||     
T  6499763 taatacaaatattaaatgggtgtggattttttgctgatattggaattaaagtccttgtagagcgaagccttttaattattgac-aataggaacaagctta 6499665  T
Q  101 gaatgcatgatttgttgcgaga 122  Q
    ||||||||||||||||| ||||    
T  6499664 gaatgcatgatttgttgagaga 6499643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 6547318 - 6547199
Alignment:
Q  2 aatacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgg 101  Q
    |||||| ||||| ||||| |||  | ||| ||| || |||||||| || |||||||| ||||||||| |||| ||| ||||  ||| ||||||  ||| |    
T  6547318 aatacaaatattaaatgggtgtagattttttgctgatattggaattaaagtccttgtagagcgaagccttgtaactgttgac-aataggaacaagcttag 6547220  T
Q  102 aatgcatgatttgttgcgaga 122  Q
    |||||||||||||||| ||||    
T  6547219 aatgcatgatttgttgagaga 6547199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 5691537 - 5691420
Alignment:
Q  4 tacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaa 103  Q
    ||||||||||  |||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||| || ||||||| ||| |||    
T  5691537 tacatatattagatggttgtgatctttatgcaggaattggaataaatgtccttgtggagcgaagccttgtgactgttgatg-ataggaacaggcttagaa 5691439  T
Q  104 tgcatgatttgttgcgaga 122  Q
    |||||||||||||||||||    
T  5691438 tgcatgatttgttgcgaga 5691420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5148386 - 5148268
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||  | ||||||||| |||||||| |||||| ||  |||  | ||||||    
T  5148386 atacatatattaaatggctgtgaactttatgcagaaattggaataaatgtcctactggagcgaagccttgtgactgttgatg-atatgaatcggcttgga 5148288  T
Q  103 atgcatgatttgttgcgaga 122  Q
    ||||||||||||||||||||    
T  5148287 atgcatgatttgttgcgaga 5148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 5395618 - 5395728
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| |||||| | ||||||| ||||||||||||| ||| ||||||||||||||||||| |||| ||| |||||| || |||||||||||| |    
T  5395618 atacatatattaaatggtagcgaactttttgcagaaattggagtaagtgtccttgttgagcgaagccttgtaactgttgatg-ataggaacagacttgca 5395716  T
Q  103 atgcatgatttg 114  Q
    ||||||||||||    
T  5395717 atgcatgatttg 5395728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 5094621 - 5094734
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 107  Q
    |||||| ||||| |||| ||||| ||| ||||||||||||| | ||||||||||||| ||  |||| ||| |||||| ||  ||||| ||||||||||||    
T  5094621 tatattaaatggatgtggactttttgctgaaattggaataagtatccttgttgagcgtagtcttgtaactgttgatg-ataagaacaaacttggaatgca 5094719  T
Q  108 tgatttgttgcgaga 122  Q
    |||||||||||||||    
T  5094720 tgatttgttgcgaga 5094734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 5104286 - 5104181
Alignment:
Q  16 atggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgt 115  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||||||||||  || | ||| |||||| ||  ||||| ||||||||||||||||||||    
T  5104286 atggatgtggactttttgcagaaattggaataagtatccttgttgagcgaagtcttataactgttgatg-ataagaacaaacttggaatgcatgatttgt 5104188  T
Q  116 tgcgaga 122  Q
    |||||||    
T  5104187 tgcgaga 5104181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 5369048 - 5369153
Alignment:
Q  16 atggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgt 115  Q
    |||| |||| ||||| ||| ||||||||||||| | ||||||||||||||||  |||| ||| |||||| ||  ||||| ||||||||||||||||||||    
T  5369048 atggatgtggactttttgctgaaattggaataagtatccttgttgagcgaagtcttgtcactgttgatg-ataagaacaaacttggaatgcatgatttgt 5369146  T
Q  116 tgcgaga 122  Q
    |||||||    
T  5369147 tgcgaga 5369153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 5075153 - 5075043
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 107  Q
    |||||| ||||| |||||||||| ||| ||||||||| ||| ||| ||||||||||||||| |||| ||| | |||| || ||||||  |||||||||||    
T  5075153 tatattaaatggatgtgaactttttgctgaaattggagtaagtgtacttgttgagcgaagccttgtaactgtcgatg-ataggaacaagcttggaatgca 5075055  T
Q  108 tgatttgttgcg 119  Q
    ||||||| ||||    
T  5075054 tgatttgctgcg 5075043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 5424333 - 5424446
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 107  Q
    |||||| ||||| |||| ||||| ||| ||||||||||||| | ||||||||||||| ||  |||| ||| |||||| ||   |||| ||||||||||||    
T  5424333 tatattaaatggatgtggactttttgctgaaattggaataagtatccttgttgagcggagtcttgtcactgttgatg-ataataacaaacttggaatgca 5424431  T
Q  108 tgatttgttgcgaga 122  Q
    |||||||||||||||    
T  5424432 tgatttgttgcgaga 5424446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 5261555 - 5261455
Alignment:
Q  21 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 120  Q
    |||| |||| ||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||  ||||||||||||| ||||||||||    
T  5261555 tgtggacttcatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgttgcga 5261457  T
Q  121 ga 122  Q
    ||    
T  5261456 ga 5261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 5285554 - 5285454
Alignment:
Q  21 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 120  Q
    |||| |||||||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||  ||||||||||||| |||| |||||    
T  5285554 tgtggactttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgctgcga 5285456  T
Q  121 ga 122  Q
    ||    
T  5285455 ga 5285454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 5183379 - 5183269
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| |||||| | ||| ||| ||||||||||||| ||| ||||||||||||| ||||| |||| ||| |||||| || |||||| |||   |    
T  5183379 atacatatattaaatggtagcgaattttttgcagaaattggagtaagtgtccttgttgagagaagccttgtaactgttgatg-ataggaacaaactgcaa 5183281  T
Q  103 atgcatgatttg 114  Q
    ||||||||||||    
T  5183280 atgcatgatttg 5183269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 5158923 - 5158810
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 107  Q
    |||||| ||||| |||||||||| ||  |||||||||||||   ||||||||||||| ||  |||| ||| ||||||  |  ||||| ||||||||||||    
T  5158923 tatattaaatggatgtgaactttttggtgaaattggaataagcatccttgttgagcgtagtcttgttactgttgatgg-taagaacaaacttggaatgca 5158825  T
Q  108 tgatttgttgcgaga 122  Q
    |||||||||||||||    
T  5158824 tgatttgttgcgaga 5158810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 5342269 - 5342339
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgt 73  Q
    ||||| ||||| ||||| |||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  5342269 atacaaatattaaatggctgtggactttttgcagaaattggaataagtgttcttgttgagcgaagccttgt 5342339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 5353199 - 5353097
Alignment:
Q  220 tgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgc 319  Q
    ||||| ||||||||||||||| |||||||||  ||||||||||||  ||| |||| | || ||||  ||||||||||||  |||||| |||||||| |||    
T  5353199 tgatagttatccaaattggttaaccttctactctgaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagacaatgatgtgc 5353100  T
Q  320 att 322  Q
    |||    
T  5353099 att 5353097  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 5133330 - 5133214
Alignment:
Q  5 acatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaat 104  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||| | | ||| ||||| ||||| |||| ||| ||||||  |  | |||| ||||||||    
T  5133330 acatatattaaatggttgtggactttttgccgaaattggaataagtattcttattgagagaagccttgtaactgttgatg-ctaaggacaggcttggaat 5133232  T
Q  105 gcatgatttgttgcgaga 122  Q
    ||||||||||||| ||||    
T  5133231 gcatgatttgttgagaga 5133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 5348955 - 5349070
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgc- 106  Q
    |||||| ||||| |||||||||| ||| ||||||||||||| | || ||||||| |||||  |||| ||| |||||| ||  ||||| |||||||||||     
T  5348955 tatattaaatggatgtgaactttttgctgaaattggaataagtatctttgttgatcgaagtcttgtcactgttgatg-ataagaacaaacttggaatgca 5349053  T
Q  107 -atgatttgttgcgaga 122  Q
     ||||||||||||||||    
T  5349054 tatgatttgttgcgaga 5349070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 5356037 - 5355933
Alignment:
Q  9 atattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcat 108  Q
    ||||| ||||| |||| ||||||||| ||||||||||||| | | ||||||||||||||| |||| ||| |||||| ||  ||| || ||| ||||||||    
T  5356037 atattaaatggatgtggactttatgctgaaattggaataagtattcttgttgagcgaagccttgtaactgttgatg-ataagaataggcttagaatgcat 5355939  T
Q  109 gatttg 114  Q
    ||||||    
T  5355938 gatttg 5355933  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 5277268 - 5277383
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| ||||| |||| | ||| |||||||  |||||||| ||||||||||||||||||||| || ||  ||||| |||   ||||  ||||||    
T  5277268 atacatatattaaatggctgtggattttttgcagaagatggaataagtgtccttgttgagcgaagcttagtaacggttgat-aataaaaacaagcttgga 5277366  T
Q  103 atgcatgatttgttgcg 119  Q
    |||||| ||||||||||    
T  5277367 atgcataatttgttgcg 5277383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 5445675 - 5445734
Alignment:
Q  26 actttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatga 85  Q
    ||||| ||||||||||||||||| |||||||||||  |||||| |||||||| |||||||    
T  5445675 actttctgcagaaattggaataagtgtccttgttgctcgaagccttgtgactgttgatga 5445734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 5068496 - 5068383
Alignment:
Q  8 tatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgca 107  Q
    |||||| ||||| || | ||||| ||| ||||||||||||| | ||||||||||||||||  | || | | ||||| ||  | |||| ||||||||||||    
T  5068496 tatattaaatggatgcggactttttgctgaaattggaataagtatccttgttgagcgaagtctggttattgttgataaaaag-aacaaacttggaatgca 5068398  T
Q  108 tgatttgttgcgaga 122  Q
    |||||||||||||||    
T  5068397 tgatttgttgcgaga 5068383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 5175441 - 5175556
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| ||||| |||| | ||| |||||||  |||||||| |||||| |||||||||||||| || ||  ||||| |||   ||||  ||||||    
T  5175441 atacatatattaaatggctgtggattttttgcagaagatggaataagtgtcctggttgagcgaagcttagtaacggttgat-aataaaaacaagcttgga 5175539  T
Q  103 atgcatgatttgttgcg 119  Q
    |||||| ||||||||||    
T  5175540 atgcataatttgttgcg 5175556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 5101120 - 5101050
Alignment:
Q  254 gaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgt 324  Q
    |||||||||||  ||| ||| ||||| |||| |||||||||||||  |||||| |||||||| ||||||||    
T  5101120 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgt 5101050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 5136221 - 5136151
Alignment:
Q  254 gaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgt 324  Q
    |||||||||||  ||| ||| ||||| |||| |||||||||||||  |||||| |||||||| ||||||||    
T  5136221 gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgt 5136151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 5351411 - 5351460
Alignment:
Q  272 tttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcat 321  Q
    |||||||| |||| |||||||||||||| |||||| |||||||| |||||    
T  5351411 tttgaagttcctcaagtggaagggcgtgacttgaagacaatgatgtgcat 5351460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 2938920 - 2938972
Alignment:
Q  272 tttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgt 324  Q
    |||||||| |||| |||||||||||||  |||||| |||||||| ||||||||    
T  2938920 tttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgt 2938972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 5156297 - 5156245
Alignment:
Q  272 tttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgcattgt 324  Q
    |||||||| |||| |||||||||||||  |||||| |||||||| ||||||||    
T  5156297 tttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgt 5156245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 36215319 - 36215201
Alignment:
Q  3 atacatatattgaatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttgga 102  Q
    ||||||||||| |||||  ||||||||| ||||||||||||| ||| ||| ||||| ||||||||| |||| ||| |||||| || ||||||| ||||||    
T  36215319 atacatatattaaatggaagtgaactttttgcagaaattggagtaagtgttcttgtagagcgaagccttgtaactgttgatg-ataggaacaggcttgga 36215221  T
Q  103 atgcatgatttgttgcgaga 122  Q
    |||||||||||| |||||||    
T  36215220 atgcatgatttgctgcgaga 36215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 22585730 - 22585630
Alignment:
Q  21 tgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcga 120  Q
    |||| |||| ||||||||||||||||||  |||||||||||| ||||| |||||| | |||||| ||  |||||| |||||||||||||||||| |||||    
T  22585730 tgtggacttcatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacaggcttggaatgcatgatttgctgcga 22585632  T
Q  121 ga 122  Q
    ||    
T  22585631 ga 22585630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 8876390 - 8876491
Alignment:
Q  15 aatggttgtgaactttatgcagaaattggaataaatgtccttgttgagcgaagctttgtgactattgatgaattggaacagacttggaatgcatgatttg 114  Q
    ||||| |||||||||||| | ||||||||||||| ||| |||||||| |||||| |||| || || ||||||  |||| |  ||||||||||||||||||    
T  8876390 aatgggtgtgaactttatcctgaaattggaataagtgttcttgttgaacgaagccttgtaaccatggatgaa-aggaatatgcttggaatgcatgatttg 8876488  T
Q  115 ttg 117  Q
    |||    
T  8876489 ttg 8876491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 47985729 - 47985625
Alignment:
Q  220 tgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgc 319  Q
    ||||| ||||||||||||||| |||||  |   ||||||||||||  ||| ||||||||| |||| ||||||| ||| |  ||| || |||||||| |||    
T  47985729 tgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgc 47985630  T
Q  320 attgt 324  Q
    |||||    
T  47985629 attgt 47985625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 47995016 - 47994912
Alignment:
Q  220 tgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgc 319  Q
    ||||| ||||||||||||||| |||||  |   ||||||||||||  ||| ||||||||| |||| ||||||| ||| |  ||| || |||||||| |||    
T  47995016 tgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgc 47994917  T
Q  320 attgt 324  Q
    |||||    
T  47994916 attgt 47994912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 48004303 - 48004199
Alignment:
Q  220 tgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgc 319  Q
    ||||| ||||||||||||||| |||||  |   ||||||||||||  ||| ||||||||| |||| ||||||| ||| |  ||| || |||||||| |||    
T  48004303 tgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgc 48004204  T
Q  320 attgt 324  Q
    |||||    
T  48004203 attgt 48004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 48013588 - 48013484
Alignment:
Q  220 tgataattatccaaattggttgaccttctacagtgaaggttcttcaataatttttgaagtacctcgagtggaagggcgtgtcttgaaaacaatgatttgc 319  Q
    ||||| ||||||||||||||| |||||  |   ||||||||||||  ||| ||||||||| |||| ||||||| ||| |  ||| || |||||||| |||    
T  48013588 tgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatgtgc 48013489  T
Q  320 attgt 324  Q
    |||||    
T  48013488 attgt 48013484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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