View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_33 (Length: 341)
Name: NF18309_low_33
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 50254003 - 50253688
Alignment:
| Q |
12 |
atgaagctgtcgaggatggaagaagggaaccattcatcgggggaatggcgagctgcgccataaactttccatggacctccgagacaatcagtctgcttca |
111 |
Q |
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| T |
50254003 |
atgaagctgtcgaggatggaagaagggaaccattcatcgggggaatggcgagctgcgccataaactttccatggacctccgagacaatcaggctgcttca |
50253904 |
T |
|
| Q |
112 |
aggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatgcgccatatatcacagtcactgtaaattaatgga |
211 |
Q |
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| T |
50253903 |
aggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatgcgccatatatcacagtcactgtaaattaatgga |
50253804 |
T |
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| Q |
212 |
acctttgatggcagtgtattgactggtgactagtgatgttacactacaattaattatatctagaaaacggagcatgtgaatggatattatactaatggat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50253803 |
acctttgatggcagtgtattgactggtgactagtgatgttacactacaattaattatatctagaaaacggagcatgtgaatggatattatactaatggat |
50253704 |
T |
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| Q |
312 |
aagctttgatgtttct |
327 |
Q |
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|||||||||||||||| |
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| T |
50253703 |
aagctttgatgtttct |
50253688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 50246867 - 50246694
Alignment:
| Q |
11 |
gatgaagctgtcgaggatggaagaagggaaccattcatcgggggaatggcgagctgcgccataaactttccatggacctccgagacaatcagtctgcttc |
110 |
Q |
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|||||||| ||| ||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
50246867 |
gatgaagccgtctaggatggaagaagggaaccattcgtctggggaatggcgagcaccgccgtaaactttccatggacctccgagacaatcaggctgcttc |
50246768 |
T |
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| Q |
111 |
aaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgggactttgatgcgccat |
184 |
Q |
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| T |
50246767 |
aaggcttcggctaagcttagtccaaccattcccgtaactccgacaactagtgctaccggactttgatgctccat |
50246694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 27644024 - 27644181
Alignment:
| Q |
11 |
gatgaagctgtcgaggatggaagaagggaaccattcatcgggggaatggcgagctgcgccataaactttccatggacctccgagacaatcagtctgcttc |
110 |
Q |
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|||||||| || ||||||||||| || ||||| | |||| ||| |||||||||| || |||||||||||||| ||||| |||||||||| ||||||| |
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| T |
27644024 |
gatgaagccatcaaggatggaagagggaaaccagccgtcggcggagcggcgagctgcaccgtaaactttccatgggcctccaagacaatcaggctgcttc |
27644123 |
T |
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| Q |
111 |
aaggctttggctaagcttaggccagccattcccgttactccaactactagtgctacgg |
168 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
27644124 |
aaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacgg |
27644181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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